PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00655.1.g00200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 402aa MW: 42451.7 Da PI: 8.5765 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 141.8 | 5.3e-44 | 106 | 259 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s a Zpz_sc00655.1.g00200.1.sm.mk 106 PAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGA 186 689*****************************************************************9999999999999 PP TCP 83 snsssg.kaaksaakskksqksaasalnlakesr....................akarararertrekmrikn 134 s++s + +aa++ ++ +++q++ a++l +++ + a + +r+r+r++++ ++++ Zpz_sc00655.1.g00200.1.sm.mk 187 SHHSGAsRAATAFHHLQPQQHDVAAMLGWNHHYQqqqqllqppppqqqapqdpgAGEFMRKRYREADDLFKDT 259 98877746666666***************99888788999999999998888888888888888888887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.349 | 111 | 165 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-38 | 111 | 254 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MDHGAAPSSS TSTSTNSSRS ASEQQQHHHH HQHQQAHQQV QHHAFYYAAA APGGAANAAA 60 AVGMAPFMGS LSIVPAAAAA GEAQAAQQAA PAASSGEEKK QQVVVPAKRP TKDRHTKVEG 120 RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV 180 SLRSGASHHS GASRAATAFH HLQPQQHDVA AMLGWNHHYQ QQQQLLQPPP PQQQAPQDPG 240 AGEFMRKRYR EADDLFKDTA ARQQQQQQPD GASGADEPEE QKARALPTAM WAVAPNSSAA 300 GGAFWMQPAW AFGGGGPAAA GTVQAPLQFM STRSGGDFPG GHMADNSIGM LAALNTSVQH 360 QHQHQQDEQP QQQQPKSTMA QQQRHRAGAN GGNAGHGAAS PQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00655.1.g00200.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063432 | 1e-124 | BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds. | |||
GenBank | KJ726897 | 1e-124 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450404.1 | 1e-115 | transcription factor PCF3 | ||||
Refseq | XP_004978832.1 | 1e-115 | transcription factor PCF3 | ||||
Swissprot | Q53PH2 | 9e-95 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | A0A0A9G9I1 | 1e-121 | A0A0A9G9I1_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G003944_P01 | 1e-119 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-46 | TCP family protein |