PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00654.1.g00090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YC | ||||||||
Protein Properties | Length: 236aa MW: 26309.9 Da PI: 4.6738 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 130.8 | 4.5e-41 | 88 | 191 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++ w+++ e++t+fk +++Pl+rikki+kad dvkm++ eaPv+++kace+fi eltlr+wl+a+ kr tl++ d Zpz_sc00654.1.g00090.1.sm.mk 88 QLQALWADKmaeSEQETEFKLNAIPLTRIKKIMKADRDVKMVAGEAPVVFAKACEMFIQELTLRAWLKARWFKRMTLRRKD 168 79999*9985556999***************************************************************** PP NF-YC 79 iaaavtrtdifdflvdivprdel 101 + aa+ + d+fdflvdi+p del Zpz_sc00654.1.g00090.1.sm.mk 169 VVAAIIQNDMFDFLVDIIPPDEL 191 *******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.24E-24 | 73 | 182 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.4E-15 | 111 | 173 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-29 | 112 | 187 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSIRGRLKCV FDMEQPSPAN VNGGVTDSDT SAASSPMPYE HVTLAYVPPS AGAAIPPSSQ 60 SASEERQNAF HRTLQLDQQK QQQYLQEQLQ ALWADKMAES EQETEFKLNA IPLTRIKKIM 120 KADRDVKMVA GEAPVVFAKA CEMFIQELTL RAWLKARWFK RMTLRRKDVV AAIIQNDMFD 180 FLVDIIPPDE LKEAGVAAML PPTTAPAMGP SYVPEMTYEN QEQQRSTSDG GGDELD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-33 | 99 | 187 | 6 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00654.1.g00090.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6PNJ3 | 2e-44 | A0A3L6PNJ3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fa02054.1.p | 7e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15703 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 6e-43 | nuclear factor Y, subunit C2 |