PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00652.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 540aa    MW: 60169.1 Da    PI: 10.7208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00652.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-18314361148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zpz_sc00652.1.g00130.1.am.mk 314 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 361
                                   79********************************************97 PP
2Myb_DNA-binding53.65e-17367412148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Zpz_sc00652.1.g00130.1.am.mk 367 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 412
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-25306364IPR009057Homeodomain-like
PROSITE profilePS5129418.639309361IPR017930Myb domain
SuperFamilySSF466895.62E-30311408IPR009057Homeodomain-like
SMARTSM007171.6E-15313363IPR001005SANT/Myb domain
PfamPF002491.5E-16314361IPR001005SANT/Myb domain
CDDcd001678.45E-12316361No hitNo description
PROSITE profilePS5129426.333362416IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-26365416IPR009057Homeodomain-like
SMARTSM007175.8E-17366414IPR001005SANT/Myb domain
PfamPF002493.3E-16367412IPR001005SANT/Myb domain
CDDcd001671.03E-11369412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MRLLSTVQAA EHDDEHSRNV GLLLMVGWRV ASFSEAATSR CQRHSKVTKR LNCGSSDEAR  60
SSRDPETSLC LLPRRKLAAS RQMQSNLLLP ENTSVWSCNS AYPRTPSRAC SNLLLPENTS  120
VWSCNSAYPR TPSRACVRFQ DSRRGRPVRL WARSDESSRA ARTGRAPNAV SIYRPRWRVG  180
TPRYVRAWPT SAAPTRRVRL GRRRTSPRNR ARRDLIDLNG GVQTEAGRRG VRCNSEPSCG  240
RTVRLTCGAH LVRGRVLVAR KPTKILVQRW AVITSEYTEL LRPATLPSSH SAITGLSARM  300
GRSPCCEKEA GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PAKAGLRRCG KSCRLRWTNY  360
LRPDIKRGKF TLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLARMG  420
IDPSAALFAS ADVHGAARQP VQTPHSYVDA FGDQHHHFGG EHAQQDGFLA RVLLDCSVAG  480
AEQAFAATST DPSAGEQEEE DKGYWNSILN MVNSSMSTSS SSLTSETVTE QAAYLPAGSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-273124165108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00652.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794241e-166HF679424.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB18 protein.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7219622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.24e-80myb domain protein 16