PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00650.1.g00320.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 1070aa    MW: 115178 Da    PI: 6.9461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00650.1.g00320.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.9e-10374419146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g+W +eEd  l + v+++G  +W++I ++  + R +k+c++rw +
  Zpz_sc00650.1.g00320.1.am.mk 374 KGPWLPEEDAVLRRHVAEHGEQDWSSIQSKGLLDRPGKSCRLRWVN 419
                                   79*************************999889***********87 PP
2Myb_DNA-binding38.13.6e-12428469245
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   g++++eE+   +d+ +q G++ W+ Ia ++  gRt++++k++w 
  Zpz_sc00650.1.g00320.1.am.mk 428 GKFSPEEERVVLDLQAQVGNK-WAMIATHLH-GRTDNDVKNFWS 469
                                   79*******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.550.106.9E-6640310IPR029044Nucleotide-diphospho-sugar transferases
PfamPF092589.0E-6744307IPR015338Exostosin , C-terminal
PROSITE profilePS5129415.119369421IPR017930Myb domain
SuperFamilySSF466893.16E-24372468IPR009057Homeodomain-like
SMARTSM007173.9E-9373423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-18375428IPR009057Homeodomain-like
CDDcd001674.19E-9376421No hitNo description
PfamPF139211.5E-10377436No hitNo description
PROSITE profilePS5129420.537422476IPR017930Myb domain
SMARTSM007176.4E-11426474IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-19429474IPR009057Homeodomain-like
CDDcd001671.03E-7429468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006024Biological Processglycosaminoglycan biosynthetic process
GO:0015012Biological Processheparan sulfate proteoglycan biosynthetic process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MPPRSRHRLR LLFLFLVQLP VVAFARIGGV KEDPDEALLR PDRLTVLLSG YSERRLPLLR  60
AITGAYSAHP LVLSVVVIWC NPATPDRVLH GGGGFPPLVT LHRAASASLN SRFLPDSAIL  120
TSAVAVSDDD VLPDAAALSF AFAAWQQQAA CSGGALVGFF PRSHHLDLAR GRWAYAAAEP  180
GRYSMVLTKF MVLGADLLRK YSCSPELAAA RAVVDRVRNC EDILMNFVAA DESGQGPVLV  240
EAGSVRDWGD PRNDANASGD GEEGGAMKDV GLSSTGGTGH WEKRGECITE FHRLLGRMPL  300
RYSYGKLVEA AVGEQGLCSK GGRLVRCDQD PGELGTARRE SASLAWSRWP RAGGERARMP  360
PRRRGGGDRP AVKKGPWLPE EDAVLRRHVA EHGEQDWSSI QSKGLLDRPG KSCRLRWVNK  420
LQPGLKGGKF SPEEERVVLD LQAQVGNKWA MIATHLHGRT DNDVKNFWST RQKRLARLLQ  480
EPPPRRRAVK QNSSSASSAR CRELRARLQE PCSSITTFHA STYDGGQSSS QEPNEVEHGV  540
DSRLPGALCL PAPVDSAVGR GSPSVVPSDE TCAENPVPGA GAVGLASLHH AAFVEPLTAV  600
PTALSFGPED GSVLCDNEAH CIEPQPLVVI PADPFLHDEY FAAAAAPRRD TSGLRFDDLT  660
PEMLDFFEQI CVLSSARPCP FFVASACTVP PSTTDVGLFH QPPPCTSPSA IQLIILCIGP  720
LKTTAHGSSP RHARSQASRG PQSRRARVAV RDWKVGASRP FQSWNRSITT LRSPLHLSAL  780
LRCRAQLSPR VQIPPASRRC RTYHSKDERL STRETEATGT SRREQSAASE MVVLMEEFGG  840
LSLKRKGADE PELFDVGGDD RSVFPLSCRA TKMRRLASPD GGQDGPGPAV SGGGWVQGQG  900
DLAMGDAAPA PSPAAEEERA VVLYGGPGAP DAAEGASRPR PCSVRVDADW VRAMLREADS  960
RTVRDLLAGA LEHCDDRALA VVPWVPPSPA EEAEPSTAAE AADGEDGDGA AAMDFEEEGE  1020
DQVPRWTGQT TFGSAGAGFG EGCMYRWPQH CMVPPQLPVL GQASPVMWSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-2337047423126MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00650.1.g00320.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1263434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-46MYB family protein