PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00649.1.g00170.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 272aa    MW: 30658.8 Da    PI: 10.0868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00649.1.g00170.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151454748
                                    HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +Ede++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l
  Zpz_sc00649.1.g00170.1.am.mkhc 14 QEDEIIIQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 54
                                    6*************************.*************97 PP
2Myb_DNA-binding30.86.8e-106091134
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                                    + +WT+eE+ +l++a++ +G++ W+  ++ ++ g
  Zpz_sc00649.1.g00170.1.am.mkhc 60 KEAWTQEEEIRLIHAHQTYGNK-WAELSKFLP-G 91
                                    579*******************.*******99.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.089158IPR017930Myb domain
SMARTSM007177.4E-91356IPR001005SANT/Myb domain
CDDcd001672.75E-121454No hitNo description
SuperFamilySSF466891.15E-211491IPR009057Homeodomain-like
PfamPF139211.2E-151471No hitNo description
Gene3DG3DSA:1.10.10.602.2E-231461IPR009057Homeodomain-like
SMARTSM007173.4E-759128IPR001005SANT/Myb domain
PROSITE profilePS512948.12859105IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-1362104IPR009057Homeodomain-like
CDDcd001672.11E-56291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFHVGCSFII SYFQEDEIII QMVNKLGPKK WSTIAQALPG RIGKQCRERW HNHLNPGINK  60
EAWTQEEEIR LIHAHQTYGN KWAELSKFLP GSGISLGRRQ VGPRAQPRLR ATRLEQQLLQ  120
QYEYMNIMAD TPSVKRGLES PSAWKSPLFT AFQGAYFMSP AARAFDALGL VKQINDQRAD  180
ALEEAHEVLA SGSTKNRHSK GKWDKENTKS SLWNNGLIIS KLSSEVMAEA RVLDFNDCST  240
PARKKDDRNV DSKLGGSASS PVASSYIRMN VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2914911087MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-2914911087C-Myb DNA-Binding Domain
1msf_C1e-2914911087C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00649.1.g00170.1.am.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0171288e-59BT017128.1 Zea mays clone EL01N0365C01.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808581.19e-64transcription factor MYB3R-1-like
RefseqXP_025808582.19e-64transcription factor MYB3R-1-like
SwissprotQ94FL95e-39MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLA0A0A9D3C22e-72A0A0A9D3C2_ARUDO; Uncharacterized protein
STRINGSi021218m3e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24953879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-41myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]