PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00647.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 467aa MW: 52990.6 Da PI: 9.3305 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 214 | 261 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll+++v+q+G g+W+++a+ g++R++k+c++rw +yl Zpz_sc00647.1.g00070.1.am.mk 214 KGPWTAQEDKLLLEYVRQHGEGRWNSVAKLTGLRRSGKSCRLRWVNYL 261 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 7e-16 | 267 | 311 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ Zpz_sc00647.1.g00070.1.am.mk 267 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 311 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.825 | 209 | 261 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 212 | 308 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-17 | 213 | 263 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-18 | 214 | 261 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 215 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.46E-12 | 216 | 261 | No hit | No description |
PROSITE profile | PS51294 | 24.933 | 262 | 316 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 266 | 314 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 267 | 311 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 269 | 314 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-9 | 271 | 312 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MAAAIRMYRS SEQRLSAANR VARFFFTRRR SDLDERSGGQ VFRDEAEDLT VRLRVSSPSW 60 RRFYNEAEPF IHALPILDQH YGYPGRLLVV AETWFIPVVA TTGNTKIAGA KLHPQVETTL 120 SAENPTIALG HFRVQWQWGA PDSDVASTRA NIYAGSSSLR CRIASIQFTR SFTEDRGRQR 180 GSRRLISSIV DRQKKRLEME GRFGWGREEG GWRKGPWTAQ EDKLLLEYVR QHGEGRWNSV 240 AKLTGLRRSG KSCRLRWVNY LRPDLKRGKI TPQEESVILE LHALWGNRWS TIARSLPGRT 300 DNEIKNYWRT HFKKGKPSKN IERARARFLK QRCEMQSQLL LQGQEPPPPP QQLEEPGHDD 360 AATRKPAPAA CLAQQNEDLK MMMMDMDDLL YQLCPMSSCS SSYHLHGGSG SASAASEGSS 420 EEQLHGGDTW GWGSLWNHEG VVDDTDGGAC GWDSSFPWLQ DQGLAFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 214 | 314 | 7 | 106 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 195 | DRQKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00647.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099283 | 1e-140 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. | |||
GenBank | AK111807 | 1e-140 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454181.1 | 1e-130 | transcription factor MYB51 | ||||
TrEMBL | C5XXQ5 | 1e-129 | C5XXQ5_SORBI; Uncharacterized protein | ||||
STRING | Sb04g026210.1 | 1e-130 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 2e-59 | myb domain protein 79 |