PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00644.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 661aa    MW: 71542 Da    PI: 11.011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00644.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-174085147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  r  W + Ed +l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zpz_sc00644.1.g00030.1.am.mk 40 RSHWRPAEDARLKDLVAQHGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 85
                                  678*****************************.***********996 PP
2Myb_DNA-binding46.77.1e-1592136147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +++ +E+ +l  a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zpz_sc00644.1.g00030.1.am.mk  92 RRAFSSDEETRLMAAHRAYGSK-WALIARLFP-GRTDNAVKNHWHVL 136
                                   6789******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0093590IPR017930Myb domain
SMARTSM007174.1E-133988IPR001005SANT/Myb domain
PfamPF002493.6E-154085IPR001005SANT/Myb domain
SuperFamilySSF466893.15E-2640136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-244293IPR009057Homeodomain-like
CDDcd001672.06E-124384No hitNo description
PROSITE profilePS5129417.1291141IPR017930Myb domain
SMARTSM007171.5E-1091139IPR001005SANT/Myb domain
PfamPF002493.5E-1292135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-1794139IPR009057Homeodomain-like
CDDcd001671.64E-894136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAAGSFGPAP PAAGEQVVVA GDGCEVEQGR GGQGKKLCAR SHWRPAEDAR LKDLVAQHGP  60
QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI TRRAFSSDEE TRLMAAHRAY GSKWALIARL  120
FPGRTDNAVK NHWHVLTARR KREQSGSLRR RKSTTSSSPL STPAPVIPSH HGPPPVVLRQ  180
DHYPSPHGVL HEAAVYSGDS DESTCTTDLS LGPAFSALSP ARHHQTLPSD DCGGKSKPPF  240
FDFLGVGATS SGSTSPGGGE GLRTMISPTL SWLTCLGIRL WVSERSSTAM PLGNQAGQCV  300
GGGVAGNVDG LEAVGIEVNC YALLAPRVAH EGPHYPRREP KRCRAGKNKA THGREAAKSN  360
ERVFTGLPYT HARTHARGSL SSEWSVVTRG QGDSGAACSL LSPQATVCLP SIRPQLPAFP  420
YLAGHRPRRV HLKHSSLLAA VFATLYWHNE VHAVSTASSS HSCSSPGRAR SRSHYTAPRK  480
IAMREFFRSS GRTRRTPTFR GVAFLENCGF CKLAAGASMA IGLLPMSGLT RRACATQGLR  540
AESDDERRAW KPCGLCSRKR ATHEHRSANK RRAQKMGRSP SLAQATRKAR MKRLSPAGAR  600
SAEEHGRADV LVQTRQLLHR DAARGGVAAV ARGSLRQLVE LYELAHLSRS EMRVADRSDC  660
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-264314010107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138150RRKREQSGSLRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00644.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648551e-115EU964855.1 Zea mays clone 282116 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.14e-61myb domain protein 56