PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00644.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 551aa    MW: 60546.5 Da    PI: 10.0616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00644.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-1655100147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zpz_sc00644.1.g00010.1.am.mk  55 RGHWRPAEDARLKELVAQFGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 100
                                   899*****************************.***********996 PP
2Myb_DNA-binding56.37.3e-18107151147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zpz_sc00644.1.g00010.1.am.mk 107 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 151
                                   678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14250101IPR017930Myb domain
SMARTSM007171.9E-1354103IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-2755148IPR009057Homeodomain-like
PfamPF002492.3E-1555100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2556108IPR009057Homeodomain-like
CDDcd001673.13E-125899No hitNo description
PROSITE profilePS5129427.25102156IPR017930Myb domain
SMARTSM007178.8E-16106154IPR001005SANT/Myb domain
PfamPF002497.8E-15107151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-20109154IPR009057Homeodomain-like
CDDcd001671.86E-7118152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MAPEMVGFYG PVPPAPFQKE REQQVVVDAE DVYDVEDGGA GHGHGGGGQG KLCSRGHWRP  60
AEDARLKELV AQFGPQNWNL IAEKLDGRSG KSCRLRWFNQ LDPRINRRAF SEEEEERLLA  120
AHRAYGNKWA LIARLFPGRT DNAVKNHWHV LMARRQREHA GSLRRRKPAF SSSSSPTPAP  180
PTHYAPVVVL HHHHYGSPPP LPFHATQHGG AQEAYSGGGG GGGDSDESAS TCTTDLSLGS  240
SAPVPCFYQS TYSAPTPVLG RYDMVPRAAA PAPSAFTPSP RSAFSAPSLS RHREPAFPAG  300
GDKPALPFFD FFGVGARFAS AAVAWGGRRN QHEGRQRASK SKPPRASRDG VMDLASHRRQ  360
RRFPPSQPNC SLVPVGYERT LCASSGRTMP AGPAPLPLRH RSPKMSPDAI QFSLFLFVVL  420
EEAMEWSCST THPSAGARTE SGSMTATTRR LMEKGFFYLL KPESLPHCSL WHTKAKIMRT  480
VEGIRREVED DDARTTGWYC CLLRLRQCCL AFTFAACTPV HAPIDLGRTH VRGLARAIGR  540
RRPDRRVACG W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31551557107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00644.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648551e-148EU964855.1 Zea mays clone 282116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457638.11e-120transcription factor MYB117
TrEMBLC5XH761e-119C5XH76_SORBI; Uncharacterized protein
STRINGSb03g010960.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-52myb domain protein 105