PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00631.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 689aa    MW: 72997.4 Da    PI: 8.987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00631.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.6e-34372467183
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............sss 68 
                                   a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l  +               +
  Zpz_sc00631.1.g00060.1.am.mk 372 ATGRKDRHSKVCTSRGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIRNAKEAIDKLEVLpawqptnnaaagaALP 452
                                   589**************************************************************7776655554444222 PP

                           TCP  69 saseceaesssssas 83 
                                   ++s++ ++s ++s++
  Zpz_sc00631.1.g00060.1.am.mk 453 PSSSTHPDSAENSDD 467
                                   223332222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-30373448IPR005333Transcription factor, TCP
PROSITE profilePS5136933.18375433IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MAPDKIHYLI QARPLFMPLR LRLIDRSRPR SNHGLGELRG VLHPQVLPPC RLPIRIIGWG  60
REKQLCWCWC WCCCFVGVPG AHRPIAPVLQ GRLPSRSDPD ARQYTPIIRV SYLSLQAPTT  120
TFFSLWRRGK RKGPGRVKLC VAASPVSSTT PLSGRLLLLL KWVCDVAIHP IASGLASGWM  180
RIAALAASAA KVVAVNQAGD LDPRHHHRVA HGGDGAGGGG GGGGGEADEQ QQQHNHRLLQ  240
FHQEEQDQEP PSAPVFQLQH LQARALSRQR ASSAEYALLA SMGDAGQSHS HSHLHHGGFQ  300
PQLLSFGGVG QQHHHHLHQF TAQAPAGASH SRSRAAGGGG GGEAVPASQS SSRVRSAGGE  360
IVAVQGGHIV RATGRKDRHS KVCTSRGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD  420
WLIRNAKEAI DKLEVLPAWQ PTNNAAAGAA LPPSSSTHPD SAENSDDQAQ AITVAHAGFD  480
FPIRAEGGGA TGAGGGTAFL PSSLDSDSIA DTIKSFFPVS GGTAGGEASS STAVARHSSA  540
MRFQSYTPDL LSRTGSHSQD LRLSLPDPPM FQHQQQEHDH GGNGSTQQAL FPGAGSYSVP  600
DPGGGSGYLF NVSQQAAALG GQSHTEPSDR GWPESVEADN PMSAIGFAPG IGFSGFRVPA  660
RIQGEEEHNG SGNGDKPPPP PAVSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-20380433154Putative transcription factor PCF6
5zkt_B9e-20380433154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00631.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.11e-179transcription factor PCF5
RefseqXP_021310873.11e-179transcription factor PCF5
SwissprotA2WM141e-140PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A1D6MFZ20.0A0A1D6MFZ2_MAIZE; Transcription factor TCP4
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3