PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00629.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 513aa    MW: 55841.6 Da    PI: 6.5126
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00629.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.8e-084514832254
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   ++yps +e+ +LA ++gL+  q+++WF N R +
  Zpz_sc00629.1.g00180.1.am.mk 451 HPYPSDSEKLRLAVSTGLSRGQISNWFINARVR 483
                                   89*****************************88 PP
2BELL53.94.4e-18312374971
                          BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                                   +akLl ll e++ r ++y  +l  v+ssFe + g g+a+ Yt+l ++a++rhF +L+ ai  +
  Zpz_sc00629.1.g00180.1.am.mk 312 QAKLLGLLGELESRQERYFGELGRVASSFEPALGPGAAAAYTALMSQAMARHFGNLRRAILRR 374
                                   58**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-14245373IPR006563POX domain
PfamPF075266.8E-24250371IPR006563POX domain
PROSITE profilePS5007111.337424487IPR001356Homeobox domain
CDDcd000868.74E-11427488No hitNo description
SMARTSM003891.2E-8427491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-25432493IPR009057Homeodomain-like
SuperFamilySSF466891.97E-16433495IPR009057Homeodomain-like
PfamPF059201.4E-16444483IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MMNLGGAPAS FHNEANPDDS FMNLMLKDQR PGETDGCLLH DTVPHHSDDG ARFMAYHLTE  60
LGRTLNWTSL ELDMKTFTMP QLLLVSSLLQ TMIQTSHQEH AAGLNVTVEI DHLKQQQGKK  120
SRRCTTPETN STGHTRSSDL LNSRAAGKGD CRGTPEKALL GFPKIRTHRE KGSPKQAPVP  180
HDDSGNRSWQ LPLPFEQCGR CNEHTCQADG LKGAGPLVLT LGPLGSGADR PCSSCSCGAA  240
PGPTPETVAV LRGSRYLGPA QELLSEAVRV ADDDLAGGGT GDGEDAATEE KLQAVARRMM  300
RRAAKSDADG VQAKLLGLLG ELESRQERYF GELGRVASSF EPALGPGAAA AYTALMSQAM  360
ARHFGNLRRA ILRRLRRHAS AAAMRRREAV TGAEDDDEND DDDEEEKVDR VVRRTMLAAA  420
ARAEQAWRPL RGLPEGSVAV LRAWLFDHFL HPYPSDSEKL RLAVSTGLSR GQISNWFINA  480
RVRLWKPMIE EMYNDEFSED GPLSNSTSGA SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16433491563Homeobox protein Meis2
4xrm_B3e-16433491563Homeobox protein Meis2
5bng_A2e-16433491159Homeobox protein Meis2
5bng_B2e-16433491159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00629.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0823962e-85AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678610.11e-107BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678611.11e-107BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678612.11e-107BEL1-like homeodomain protein 10 isoform X1
TrEMBLA0A0E0D4K91e-105A0A0E0D4K9_9ORYZ; Uncharacterized protein
STRINGPavir.Ia00979.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.29e-35BEL1-like homeodomain 6