PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00627.1.g00130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 504aa MW: 54404.2 Da PI: 9.7518 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.6 | 3.4e-51 | 213 | 347 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhP+d+elv++yL++k++gk + +vd++k+ePwdLp +v + +ewyfFs +d+kyatg+r+nrat Zpz_sc00627.1.g00130.1.am.mk 213 LPPGFRFHPRDDELVMDYLCRKLSGKGgggAYGGINMIDVDLNKCEPWDLPDEVCVGGREWYFFSLHDRKYATGQRTNRAT 293 79************************97753332458899***********8888899*********************** PP NAM 79 ksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +sgyWkatgkd+++ ++ +g++vg++ktLvfy+grap+g+ktdWvmhe+r+ Zpz_sc00627.1.g00130.1.am.mk 294 RSGYWKATGKDRPISRRsgsgSGAVVGMRKTLVFYHGRAPRGSKTDWVMHEFRV 347 ***************9988877788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-56 | 202 | 378 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.354 | 213 | 378 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 214 | 347 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MLANSGISNA PTCGDDHFDQ CFVISVPQKL NHDAVNAGTV FSICAGLSKP SSVRDMVSRV 60 ITEGFLLAET TRTSASFGAP RNMRTKRLHP DVAAAAAAAV TATSPWMDID GGQFRGRRQG 120 SSASVVRDER RLSRHRPLRA QWSDGDAFGR DRWAGSIKQF GHGDGDTPVV ARRGRAVADA 180 VIASTQRVSL LKPRKKKKRA RAMSSISLVE ARLPPGFRFH PRDDELVMDY LCRKLSGKGG 240 GGAYGGINMI DVDLNKCEPW DLPDEVCVGG REWYFFSLHD RKYATGQRTN RATRSGYWKA 300 TGKDRPISRR SGSGSGAVVG MRKTLVFYHG RAPRGSKTDW VMHEFRVEGP AVADAGGVAG 360 RPGSTLKEDW VLCRVFYRGR TATARPAATA DVEAEAGSLP NELISLPMPY APPADAYLLA 420 LDHAPAATIG GFYYQQDDDA DGGLAATQAK SLSSFRELLT GMVERDGGAA AKVELHQDWT 480 EAAYAAGQQS AAPAQTWNPF LNSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-48 | 208 | 382 | 15 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 198 | RKKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00627.1.g00130.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963031 | 1e-152 | EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824710.1 | 1e-134 | NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A2S3IAF0 | 1e-132 | A0A2S3IAF0_9POAL; Uncharacterized protein | ||||
STRING | Si010680m | 1e-130 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 8e-64 | NAC domain containing protein 1 |