PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00627.1.g00130.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 504aa    MW: 54404.2 Da    PI: 9.7518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00627.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.4e-512133471128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                   lppGfrFhP+d+elv++yL++k++gk          + +vd++k+ePwdLp +v  + +ewyfFs +d+kyatg+r+nrat
  Zpz_sc00627.1.g00130.1.am.mk 213 LPPGFRFHPRDDELVMDYLCRKLSGKGgggAYGGINMIDVDLNKCEPWDLPDEVCVGGREWYFFSLHDRKYATGQRTNRAT 293
                                   79************************97753332458899***********8888899*********************** PP

                           NAM  79 ksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +sgyWkatgkd+++ ++    +g++vg++ktLvfy+grap+g+ktdWvmhe+r+
  Zpz_sc00627.1.g00130.1.am.mk 294 RSGYWKATGKDRPISRRsgsgSGAVVGMRKTLVFYHGRAPRGSKTDWVMHEFRV 347
                                   ***************9988877788***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-56202378IPR003441NAC domain
PROSITE profilePS5100555.354213378IPR003441NAC domain
PfamPF023651.4E-25214347IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MLANSGISNA PTCGDDHFDQ CFVISVPQKL NHDAVNAGTV FSICAGLSKP SSVRDMVSRV  60
ITEGFLLAET TRTSASFGAP RNMRTKRLHP DVAAAAAAAV TATSPWMDID GGQFRGRRQG  120
SSASVVRDER RLSRHRPLRA QWSDGDAFGR DRWAGSIKQF GHGDGDTPVV ARRGRAVADA  180
VIASTQRVSL LKPRKKKKRA RAMSSISLVE ARLPPGFRFH PRDDELVMDY LCRKLSGKGG  240
GGAYGGINMI DVDLNKCEPW DLPDEVCVGG REWYFFSLHD RKYATGQRTN RATRSGYWKA  300
TGKDRPISRR SGSGSGAVVG MRKTLVFYHG RAPRGSKTDW VMHEFRVEGP AVADAGGVAG  360
RPGSTLKEDW VLCRVFYRGR TATARPAATA DVEAEAGSLP NELISLPMPY APPADAYLLA  420
LDHAPAATIG GFYYQQDDDA DGGLAATQAK SLSSFRELLT GMVERDGGAA AKVELHQDWT  480
EAAYAAGQQS AAPAQTWNPF LNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-4820838215172NAC domain-containing protein 19
3swm_B4e-4820838215172NAC domain-containing protein 19
3swm_C4e-4820838215172NAC domain-containing protein 19
3swm_D4e-4820838215172NAC domain-containing protein 19
3swp_A4e-4820838215172NAC domain-containing protein 19
3swp_B4e-4820838215172NAC domain-containing protein 19
3swp_C4e-4820838215172NAC domain-containing protein 19
3swp_D4e-4820838215172NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00627.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630311e-152EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-134NAC domain-containing protein 21/22-like
TrEMBLA0A2S3IAF01e-132A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGSi010680m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.28e-64NAC domain containing protein 1