PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00606.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 564aa MW: 59858.2 Da PI: 5.9241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.9e-12 | 377 | 422 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq Zpz_sc00606.1.g00040.1.sm.mk 377 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 422 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.58E-13 | 370 | 426 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-17 | 370 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.441 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 374 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 377 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-14 | 378 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MAGFGAVVLR DLVEGCSVLV REQSREAPLA SIQLKSVTER EMGGFVDPFT PASAWPQDPA 60 FAGSSWSGSG ASSLADSAEL EFHLRNGSSS SPALLNGGRA NETVSPLELD EQFLQEQLQG 120 HHLTHGLMHF EVDSAMERAL MAGTLGSDLS TPCAPLLCSS NDSSGSEQSG MLQSLLGEQQ 180 VPTPAAWSSA FSQISSFVGE EPSQIFGFGL LSNADLLHEA CAPDGKKYPQ LGNAQSAPLQ 240 PHDDVKHNSG KMLSFAPGQQ LNSNFDNLQI CQKKPIIDDS AGKNHKYKVA RWQLADVEFS 300 GLHHLNLSSL VSGQLSAFNA TGSALSPKQS NEARGGIIGS TATSITLSEA PNGNVAAGNG 360 GPKPRVRARR GQATDPHSIA ERLRREKISD RMKNLQELVP NSNKTDKASM LDEIIDYVKF 420 LQLQVKVLSM SRLGATEAVV PLLTESQTQS SGLLLSPKSG RRTACGDVLE QSEHNDGAAF 480 EQEVAQLMKN NMTTAMQYLQ SKGLCLMPIA LASAISDQKG TSSAVVRPDN DGTADAGVGG 540 KGDVKKVSDV MKPFGMAKEM KSRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00606.1.g00040.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974956 | 3e-78 | EU974956.1 Zea mays clone 461679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952733.1 | 0.0 | uncharacterized protein LOC101783147 | ||||
TrEMBL | K3YRP5 | 0.0 | K3YRP5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa01634.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 2e-54 | LJRHL1-like 3 |