PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00584.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 408aa    MW: 44139.3 Da    PI: 6.6715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00584.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18120171156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   ++y GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g+
  Zpz_sc00584.1.g00160.1.am.mk 120 TRYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTADEAAIAYDRAARNIRGA 171
                                   5799******.**********754...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.94E-28120179No hitNo description
Gene3DG3DSA:3.30.730.101.1E-27121178IPR001471AP2/ERF domain
PfamPF008473.1E-10121170IPR001471AP2/ERF domain
PROSITE profilePS5103221.008121178IPR001471AP2/ERF domain
SMARTSM003802.2E-31121184IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-20121178IPR016177DNA-binding domain
PRINTSPR003676.9E-8122133IPR001471AP2/ERF domain
PRINTSPR003676.9E-8144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEEVGHVDPI MRRAVTLPMP PPVQIVVLSR LFISSSRFPA LYILCHATAP CSCGNRLLVL  60
SPNGHNEPPS LAPGLTESEK PAVTLSMDFS YFFSSSSSSE KKSSNRRQQQ QQQQDSGSAT  120
RYLGVRRRPW GRYAAEIRDP VTKERHWLGT FDTADEAAIA YDRAARNIRG ASARTNFAYP  180
DLPPGSSVTP YLSPDISADQ LQQYYANPVP VAQQPTPAAD QLAGHGSAGC EAYSSSYHVP  240
EAMSSYGADD SMAYAGNAQM DMMYDGGAGA GAGMAWCDAS ELEFGGYRDD NANANASHGM  300
YFEEGYVHSP LFSPMPAADE VDGFQLGGSS SSSINTAMLS IGYLRRRLEA PAGGIAYTSG  360
VVVSAPPYSS GIMIIVYSPL RNRNHCTPTP LWRARAWENK PSLHKAKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-161211771471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00584.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278674e-86KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.11e-105ethylene-responsive transcription factor LEP-like
TrEMBLA0A1E5VG731e-112A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP
STRINGPavir.Aa01903.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-26ERF family protein