PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00580.1.g00220.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 321aa MW: 35756.8 Da PI: 5.9332

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00580.1.g00220.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.8	3e-51	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra 77 lppGf FhP+d el+++yLk+kv+g+++e + i+evdiyk+ePwdLp+ ++ e+++w+fF++rd+ky+tg r+nra Zpz_sc00580.1.g00220.1.sm.mkhc 9 LPPGFGFHPSDAELISHYLKRKVHGQRIEY-DLIPEVDIYKHEPWDLPSkcNLPIEDNKWHFFASRDRKYPTGGRSNRA 86 79*************************9.99***********5245555999***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t++gyWk+tgkd+++++ ++++ g+kktLvf++gr p+g++t+W+mhey + Zpz_sc00580.1.g00220.1.sm.mkhc 87 TRAGYWKSTGKDRAIKQ-NKRTLGTKKTLVFHEGRPPSGKRTEWIMHEYYI 136 ************9.999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-59	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	55.912	9	159	IPR003441	NAC domain
Pfam	PF02365	6.7E-26	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEAIRNMHLP PGFGFHPSDA ELISHYLKRK VHGQRIEYDL IPEVDIYKHE PWDLPSKCNL 60 PIEDNKWHFF ASRDRKYPTG GRSNRATRAG YWKSTGKDRA IKQNKRTLGT KKTLVFHEGR 120 PPSGKRTEWI MHEYYIDETE CQASPDMKDA FVLCRVTRRD DWDNDNGSGN RNPHPQHPSD 180 AATSVVVSEK QEDPATSVVI AEKLEDTGTS VVIAEKQNNA ATLGTCAGEP NHVGTPAIAE 240 LSNDVAPTAF MAHSPNSERE LEEWMAELLT DGPSSPVVDT GSAGLSLNEQ DVESSVYRAV 300 TTWRTALQVT PARVILVEGG Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-46	7	164	13	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00580.1.g00220.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967788.1	1e-130	NAC domain-containing protein 74
Swissprot	Q7GCL7	1e-112	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A0A9BHY0	1e-145	A0A0A9BHY0_ARUDO; Uncharacterized protein
STRING	Si001021m	1e-129	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	6e-68	NAC domain containing protein 57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]