PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00565.1.g00140.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 1008aa MW: 109750 Da PI: 8.8838

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00565.1.g00140.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2.1e-40	204	281	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv++++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ Zpz_sc00565.1.g00140.1.am.mkhc 204 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKALVANQMQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 281 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-34	198	266	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.881	202	279	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-37	203	282	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.8E-30	205	278	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MLRLSSPGSP AASFRDPVAR IGAVGRREVG PQVAPPLFLH QIQQLPPHAA AAKKRGQPWP 60 AVPPAKPAVV ADAGAGGGDW NPRLWDWDSR SLTARPSPDA LRLSSGAGQS QQQQPPPAAA 120 RAAEASRQGS GALNFQLGLR EDGATAMDTT GPATVVSSPS PPRSTAAGQE PVVRPSKRVR 180 SGSPGSAGGS GGGGAANGGG SYPMCQVDDC RADLTSAKDY HRRHKVCETH SKTTKALVAN 240 QMQRFCQQCS RFHPLAEFDE GKRSCRRRLA GHNRRRRKTQ PTDVASQLLL TGNQENSANR 300 TQDIVDLITV IARLQDEEVR RPQAADYGEG TAVVEVSTSR AWCAPPLELF KDSERLTENG 360 SPPNPGYQSC YASTSCSDHS PSSSNSDEQD RTGRIIFKLF GKEPSTIPGN LRNEIINWLK 420 HSPTEMEGYI RPGCLVLSMY LSMPPIAWDD LEENLLQRVN MLVQGSDVDF WRKGRFLVRT 480 DTQLVSYKDG MTRLSKSWRT WNTPELTFVS PIAVVGGKKA SLVLKGRNLT VPGTQIHCTN 540 MGKYISKEVL CSAYPGTIYD DSGVETFDLP GEPNLILGRC FIEVENRFRG NSFPVIVANS 600 SVCQELRNLE VELEDSQLHD VCLDDQVHDR RQSKARDQAL HFLNELGWLF QRAAACTPST 660 KSDYVVICPD NSKLYPFVPN LPGPGGLTPL HLAASIENAE DIVDALTDDP QQIGLSCWQS 720 VLDDDGQSPE TYAKLRNHNS YNELVAQKLA DRKNNQADEA PHSRRAIPDG GVRRISFLAL 780 FRRAMAPCVD PPPGDSGQCR ALATFVDEAG TTVAATTHGV AVAPNGPPVR SAAFASLSCG 840 GPARAHSSAL FPPSASGSIP ITSVCVQARL VLSIGQWRRD DGTPSLFTAR RELIHPSIHG 900 PTMASRLTRR DHARLQRHTK DRGNVMLLRS FSRSDCGTGA ACESHYWCEY AIDRRTVRRG 960 AARQPTSTHH RSCLRRHLRR EAGWRQTAAG RRTICASSTR SGRTDGST

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MLRLSSPGSP AASFRDPVAR IGAVGRREVG PQVAPPLFLH QIQQLPPHAA AAKKRGQPWP  60
AVPPAKPAVV ADAGAGGGDW NPRLWDWDSR SLTARPSPDA LRLSSGAGQS QQQQPPPAAA  120
RAAEASRQGS GALNFQLGLR EDGATAMDTT GPATVVSSPS PPRSTAAGQE PVVRPSKRVR  180
SGSPGSAGGS GGGGAANGGG SYPMCQVDDC RADLTSAKDY HRRHKVCETH SKTTKALVAN  240
QMQRFCQQCS RFHPLAEFDE GKRSCRRRLA GHNRRRRKTQ PTDVASQLLL TGNQENSANR  300
TQDIVDLITV IARLQDEEVR RPQAADYGEG TAVVEVSTSR AWCAPPLELF KDSERLTENG  360
SPPNPGYQSC YASTSCSDHS PSSSNSDEQD RTGRIIFKLF GKEPSTIPGN LRNEIINWLK  420
HSPTEMEGYI RPGCLVLSMY LSMPPIAWDD LEENLLQRVN MLVQGSDVDF WRKGRFLVRT  480
DTQLVSYKDG MTRLSKSWRT WNTPELTFVS PIAVVGGKKA SLVLKGRNLT VPGTQIHCTN  540
MGKYISKEVL CSAYPGTIYD DSGVETFDLP GEPNLILGRC FIEVENRFRG NSFPVIVANS  600
SVCQELRNLE VELEDSQLHD VCLDDQVHDR RQSKARDQAL HFLNELGWLF QRAAACTPST  660
KSDYVVICPD NSKLYPFVPN LPGPGGLTPL HLAASIENAE DIVDALTDDP QQIGLSCWQS  720
VLDDDGQSPE TYAKLRNHNS YNELVAQKLA DRKNNQADEA PHSRRAIPDG GVRRISFLAL  780
FRRAMAPCVD PPPGDSGQCR ALATFVDEAG TTVAATTHGV AVAPNGPPVR SAAFASLSCG  840
GPARAHSSAL FPPSASGSIP ITSVCVQARL VLSIGQWRRD DGTPSLFTAR RELIHPSIHG  900
PTMASRLTRR DHARLQRHTK DRGNVMLLRS FSRSDCGTGA ACESHYWCEY AIDRRTVRRG  960
AARQPTSTHH RSCLRRHLRR EAGWRQTAAG RRTICASSTR SGRTDGST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	196	278	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00565.1.g00140.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320166.1	0.0	squamosa promoter-binding-like protein 15
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	A0A3S6H638	0.0	A0A3S6H638_9POAL; Squamosa-promoter binding protein-like protein (Fragment)
STRING	Pavir.Fb01917.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-90	squamosa promoter binding protein-like 14