PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00563.1.g00330.1.es.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18423.5 Da PI: 8.493 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.8 | 1.7e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGApsV+Ca C+tV Zpz_sc00563.1.g00330.1.es.mkhc 7 CNGCRSLLLYPRGAPSVCCAACHTV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 33.4 | 7.5e-11 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL Y+ +A+ VRC++CdtV Zpz_sc00563.1.g00330.1.es.mkhc 46 CGGCQTLLVYTCNATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 48.8 | 1.2e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+t+L+YP+GApsV+Ca+C++V Zpz_sc00563.1.g00330.1.es.mkhc 84 CAQCQTVLMYPYGAPSVKCAICNFV 108 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.9E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.7E-10 | 44 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-8 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.2E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.2E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MQGQIVCNGC RSLLLYPRGA PSVCCAACHT VTRVPPPGMD MARLICGGCQ TLLVYTCNAT 60 TVRCSCCDTV NLVRQVSSIA HVNCAQCQTV LMYPYGAPSV KCAICNFVTN IGVTTLRPFP 120 PAIPAPSANS YNVPSTSVPT NRSQNVTVVV ENPMTVGENG KLVSNIVVGV ATGGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00563.1.g00330.1.es.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805781.1 | 1e-103 | protein LOL2-like isoform X2 | ||||
Swissprot | Q2QMB3 | 2e-89 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A0A9MMP5 | 1e-102 | A0A0A9MMP5_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g021100.1 | 1e-98 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-53 | LSD family protein |
Publications ? help Back to Top | |||
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