PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00562.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 229aa    MW: 24833 Da    PI: 4.9618
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00562.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.5e-111243132
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                                  +g+WT+eEd  lv +++q+G+++W+++++  g
  Zpz_sc00562.1.g00030.1.sm.mk 12 KGPWTPEEDIVLVSYIQQHGPRNWRAVPENTG 43
                                  79*************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.413772IPR017930Myb domain
SuperFamilySSF466892.08E-8841IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-111044IPR009057Homeodomain-like
PfamPF002491.4E-81244IPR001005SANT/Myb domain
CDDcd001674.57E-61444No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRPPCCENV KKGPWTPEED IVLVSYIQQH GPRNWRAVPE NTGGQPLPPT YLKEQTTTSR  60
TTHLKKKVKR LQTQPADSIQ TTPSNALSSL NYYSSGSTQH GFQGMQSLNN YPSTASIGSE  120
TTATTVSDLV QKWMMRPSPA LTVANYKIAM QEFQEDQAAA AVVCNDGQFV FNDDRSSSSS  180
GTMAPVMMGC SSTATFSLLE DLLLDDMQGQ AMDGIVGISG CCCADPIMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00562.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979484.15e-77transcription factor MYB30
TrEMBLA0A1E5V9102e-79A0A1E5V910_9POAL; Myb-related protein 306
STRINGSi026733m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.15e-22myb domain protein 31