PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00559.1.g00230.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 275aa MW: 30641.2 Da PI: 7.455 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ ++++++q+G++ W++Iar+++ gRt++++k++w++ Zpz_sc00559.1.g00230.1.sm.mk 72 RGRITADEERVILELHAQWGSR-WSRIARCLP-GRTDNEIKNFWRT 115 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-9 | 52 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-19 | 52 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 53 | 66 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 20.877 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-13 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-13 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.74E-10 | 76 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 79 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MHGDRSVEVD GKSTAWSERG VNHLLLVLLL CACVRALLVV DVRPCCVRAG LKRTGKSCRL 60 RWVNYLHPGL RRGRITADEE RVILELHAQW GSRWSRIARC LPGRTDNEIK NFWRTRTRKK 120 ALEHRRNTSN GNTATASSLS SSSSAISSGS PPNRGWSSSP LVTESPPQGR SGRDDEAELE 180 EASTTTVASQ PQHQQQQLEQ KHCYTMDDQL WNEMEAASAG YVADSCGGAG HDHGGAVVAV 240 ETPPSMPSPV WEFCSDYCSL WRIDDEEYYK MRLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-16 | 53 | 121 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00559.1.g00230.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728194 | 6e-81 | KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680579.1 | 7e-74 | LOW QUALITY PROTEIN: transcription factor MYB59 | ||||
TrEMBL | K3ZD38 | 1e-72 | K3ZD38_SETIT; Uncharacterized protein | ||||
STRING | Si024470m | 2e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 3e-40 | myb domain protein 59 |