PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00559.1.g00200.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 284aa    MW: 31376.8 Da    PI: 6.3678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00559.1.g00200.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-153683148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Zpz_sc00559.1.g00200.1.sm.mk 36 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 83
                                  79********************************************97 PP
2Myb_DNA-binding49.41.1e-1589132146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T++E+ l++++++++G++ W++Iar ++ gRt++++k++w++
  Zpz_sc00559.1.g00200.1.sm.mk  89 RGRITADEERLILELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 132
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5683183IPR017930Myb domain
SuperFamilySSF466895.72E-2834130IPR009057Homeodomain-like
SMARTSM007171.9E-133585IPR001005SANT/Myb domain
PfamPF002491.1E-133683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-203790IPR009057Homeodomain-like
CDDcd001671.12E-103883No hitNo description
PROSITE profilePS5129422.43384138IPR017930Myb domain
SMARTSM007171.0E-1388136IPR001005SANT/Myb domain
PfamPF002496.4E-1489132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2291136IPR009057Homeodomain-like
CDDcd001677.21E-1193132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MCSSNKNDSK KQQGGGEQQK SGGSSTTASM AAAMRKGPWT EEEDAQLVWF VRLFGERRWD  60
FLAKVSGLKR TGKSCRLRWV NYLHPGLRRG RITADEERLI LELHAKWGSR WSRIARSLPG  120
RTDNEIKNFW RTRTRKQKAL GERPQCKDDD KSTTMTASPS SSTVTSAFFS GGGAATSSST  180
VTESALQGSS GGDDEAELDE ASTTTAATAT QHQQPHQQEC YTMDQLLLWN EMAAASYSMD  240
SWGIGHAAAP AEPASMPSPL WELCADNSLW MIDDEEYYKT LDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25361374104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25361374104C-Myb DNA-Binding Domain
1msf_C2e-25361374104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00559.1.g00200.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-103KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439162.11e-91transcription factor MYB21
TrEMBLK3ZD381e-97K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m2e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-58myb domain protein 59