PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00554.1.g00340.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 328aa    MW: 35669.7 Da    PI: 5.7861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00554.1.g00340.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-1552102148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                   +g W++eEde+l++ + ++G g+W+++++  g   + R++k+c++rw +yl
  Zpz_sc00554.1.g00340.1.am.mk  52 KGLWSPEEDEKLYNHIILYGVGCWSSVPKLAGmhwLQRCGKSCRLRWINYL 102
                                   678**********************************************97 PP
2Myb_DNA-binding47.83.4e-15108151146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++
  Zpz_sc00554.1.g00340.1.am.mk 108 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 151
                                   899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.70747102IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2147105IPR009057Homeodomain-like
SuperFamilySSF466891.5E-2850149IPR009057Homeodomain-like
SMARTSM007179.5E-1251104IPR001005SANT/Myb domain
PfamPF002491.4E-1352102IPR001005SANT/Myb domain
CDDcd001675.11E-1155102No hitNo description
PROSITE profilePS5129424.517103157IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-25106157IPR009057Homeodomain-like
SMARTSM007172.2E-14107155IPR001005SANT/Myb domain
PfamPF002491.5E-13108152IPR001005SANT/Myb domain
CDDcd001672.31E-10110150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MACAASCMAP GDQPSGSQFV RPAVSIDRTR AAGMGRQPGG TGGAGVQQKL RKGLWSPEED  60
EKLYNHIILY GVGCWSSVPK LAGMHWLQRC GKSCRLRWIN YLRPDLKRGS FSQQEEDAIV  120
GLHEILGNRW SQIASHLPGR TDNEIKNFWN SCLKKKLRQR GLDPSTHKPI SGNAEDQKQQ  180
AASTEGGTAP KQQQQLEVFD PFPLTDSFDG GFDAAGAALY GHLGSCKVDA AGGFVDYSSV  240
LDVPENLGYG GESSSNSSNT NNWNCAPEVN TVIDDVAAQH WGGGDDGEAL LEHKFLLPCH  300
GQQEQSMPHF DFDISRGAVV GEFNLEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27501575108B-MYB
1h8a_C9e-275015725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00554.1.g00340.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3725341e-137AK372534.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3004I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644576.11e-141PREDICTED: myb-related protein Hv33-like
SwissprotP200271e-95MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2T7DHX11e-150A0A2T7DHX1_9POAL; Uncharacterized protein
STRINGOB01G37060.11e-141(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-69myb domain protein 86