PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00554.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 428aa MW: 44645.3 Da PI: 5.7779

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00554.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.1e-06	269	309	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Zpz_sc00554.1.g00070.1.am.mk 269 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 309 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.449	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-13	266	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.97E-10	266	314	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-9	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MDATYGWAGA GQHVDDYFSS QVGCARFEMD DAFLGACFGQ QQCDGISGAG GDAGTCQVSS 60 NFGGTGGCPA GVDSDPLAIM SPGTGDVFDA SLLDAALAFS RELGDVCGAV SNGAMFSSYS 120 GTTGGNMSSG ESNNYSGGSH EAEVVSPTTA PPPSFPHASS EQALHPKRKV TDEYPSIITP 180 TTEPPPAMPF PRPGGGKRRA ATTSISFGRD TGERYEPDME AMAQVKEMIY RAAAMRPVIL 240 GPEVVAAAAA EKPRRKNVRI SSDPQTVAAR LRRERVSERL RVLQKLVPGG SKMDTASMLD 300 EAASYLKFLK SQVQALETLG TTTTTNSSST SRPSQQHYSY HNSSTPSFLG FARSSNISHG 360 GAGGEEERTA STSGPAGYHK AFTLVGLSDA KRHSFGGRLT DGYPDPHAMH ESLCGVTTGD 420 DCTAACAS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MDATYGWAGA GQHVDDYFSS QVGCARFEMD DAFLGACFGQ QQCDGISGAG GDAGTCQVSS  60
NFGGTGGCPA GVDSDPLAIM SPGTGDVFDA SLLDAALAFS RELGDVCGAV SNGAMFSSYS  120
GTTGGNMSSG ESNNYSGGSH EAEVVSPTTA PPPSFPHASS EQALHPKRKV TDEYPSIITP  180
TTEPPPAMPF PRPGGGKRRA ATTSISFGRD TGERYEPDME AMAQVKEMIY RAAAMRPVIL  240
GPEVVAAAAA EKPRRKNVRI SSDPQTVAAR LRRERVSERL RVLQKLVPGG SKMDTASMLD  300
EAASYLKFLK SQVQALETLG TTTTTNSSST SRPSQQHYSY HNSSTPSFLG FARSSNISHG  360
GAGGEEERTA STSGPAGYHK AFTLVGLSDA KRHSFGGRLT DGYPDPHAMH ESLCGVTTGD  420
DCTAACAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	256	EKPRRKN
2	251	256	KPRRKN
3	269	274	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00554.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355455	1e-101	AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818336.1	1e-162	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	5e-51	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A2T7DHT3	1e-161	A0A2T7DHT3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02901.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	8e-30	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]