PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00550.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 292aa    MW: 32496.3 Da    PI: 4.2715
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00550.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.85e-10227277353
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                      R +++k qle+Le+++ +++ p+ +++  + + ++L+ + +  WF  rR 
  Zpz_sc00550.1.g00090.1.sm.mkhc 227 ARKRLKKVQLETLERVYLRSKRPTNTMISSIVQVTNLPRKTIVKWFEDRRE 277
                                     58999********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.236222278IPR001356Homeobox domain
SMARTSM003896.8E-4224286IPR001356Homeobox domain
SuperFamilySSF466894.28E-10225279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-9225277IPR009057Homeodomain-like
CDDcd000861.83E-9225276No hitNo description
PfamPF000461.3E-7227277IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATVLLPLAT PVSSAAPRTS ISSAPWPAPF LGTRAHLGLR LRDSPRGVAC ALRRRPTKYK  60
NEDVAAEDEM DNEDEDNALE AIFKQLEEDL ENDDLSVDND EDEISEEDMA MFEQELSEAI  120
GDIGGAEESA GDLFSGFGES GSDENIKNLA AELGLDRALV IELLRNPPPK LLLMSDSLPD  180
EAPSKPEVKD AEPSSSAIVD RAEASHATEI KPETELPIHI RSAEWSARKR LKKVQLETLE  240
RVYLRSKRPT NTMISSIVQV TNLPRKTIVK WFEDRREQDG LFSSDMFAMN WY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226234ARKRLKKVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00550.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811667.11e-115protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0A9IZX91e-122A0A0A9IZX9_ARUDO; Uncharacterized protein
STRINGSi006856m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107003542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-42overexpressor of cationic peroxidase 3