PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00543.1.g00260.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 369aa MW: 38748.2 Da PI: 7.1458 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.8 | 1.2e-09 | 152 | 171 | 2 | 21 |
--SS-EEEEEEE--TT-SS- CS WRKY 2 dDgynWrKYGqKevkgsefp 21 +Dg++WrKYGqK++k++++p Zpz_sc00543.1.g00260.1.am.mk 152 SDGFKWRKYGQKSIKNNPYP 171 7******************9 PP | |||||||
2 | WRKY | 48.1 | 2.3e-15 | 206 | 241 | 23 | 58 |
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 sYY+Cts++C +kk+ve+s +dp+++++tYeg H h Zpz_sc00543.1.g00260.1.am.mk 206 SYYKCTSSRCGAKKHVEKSVDDPEMLIVTYEGPHLH 241 9*********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-25 | 145 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.933 | 146 | 244 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-7 | 149 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-26 | 151 | 243 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-6 | 153 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-11 | 203 | 243 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-11 | 204 | 241 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-25 | 205 | 242 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MTGYALPGDE ATTDGAAALW PGELDEQLIS ELLSDDSLLG PLHGPAGDSA HYCSGDAGPV 60 DAAAPTPCNS GGDGTAAERE VPQPAAVNRA LCSVYSGPTI QDIEKALSSS RPCHWMSNRR 120 YSSSIGRFGA TSTAPESKYT TKVRTCAGKM PSDGFKWRKY GQKSIKNNPY PSVGRRLYDR 180 SLHIRVVVRC RALVDKIGMA ECCGWSYYKC TSSRCGAKKH VEKSVDDPEM LIVTYEGPHL 240 HGPQPPFPRR QWTSADFLSG AAATRRGAEA PSPPLTASSG GAHPNNQPHT CDAAAGARGG 300 GVSVVADGRE NGRAEADVVV KATRSCDGCS GASVAAPGDG TALPCDSPPT TWSCPNSYFS 360 SWSLEALLP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00543.1.g00260.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101616 | 3e-43 | FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970545.1 | 5e-92 | WRKY transcription factor WRKY24 isoform X1 | ||||
TrEMBL | A0A2T7DEI5 | 8e-92 | A0A2T7DEI5_9POAL; Uncharacterized protein | ||||
STRING | Sb03g039550.1 | 2e-82 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 8e-25 | WRKY DNA-binding protein 49 |