PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00543.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 725aa    MW: 78181.5 Da    PI: 8.8352
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00543.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.23.7e-28628681155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   k+r++Wt eLH+rF+eav+qL G + A+Pk+i+++m+v+g+t+ehv+SHLQkYRl
  Zpz_sc00543.1.g00130.1.am.mk 628 KARMVWTAELHHRFIEAVAQL-GDKAAVPKAIVQVMNVEGITREHVASHLQKYRL 681
                                   68*******************.99******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.044625684IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-28626685IPR009057Homeodomain-like
SuperFamilySSF466897.17E-18626685IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-23628681IPR006447Myb domain, plants
PfamPF002491.0E-8630680IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MGVAREVEAG GSSGRQAGNA CTAVRVELSG GDAERWAGEL DWGGDASASL SQGRSCRILF  60
CLSSSSFGTG GRQLCGHEQE IRSCKRRVKS YSTEAEARVH RARVEVTVSS TAMTRSAGID  120
EPRVHLASIK TGMPRGERGA FRPLQAGEGR QRIEAALTEA STAGPSPSAR RRPDPMQSKA  180
ITPLFSWPDG RRGRRPYSAA NNSSSSSYRC TSAPAGPGRV YWPAYEHGHG GQASRDSSRS  240
CAVLTVVKPQ LETARLLLAS GSDASTSGKQ CQIRAWFGTS PVRRQGAQVA CQTSRAHDLS  300
PQLAARLPAS QLLFRDARAP FSRVLHASGW QVGWSIVRHS LRIFYCDRQF MGHPGHASET  360
MVLAPTSMDV DEKQDAHGAA LDRERRPAGR PAGTGGALSP HLLGCLLISL ISISGRARGA  420
CEPCRHLCAA ECTERPFRLP CSRRAKEAAV AVSDVTCARP QISEWRTLPE IETAGPTPSL  480
SSAAGRTARV CAAPGERNNS SEYYVMSSPR GGRPRDSPSP SSTSPPPPPP DMGTGRSECD  540
RVLEWESGLP TAAELTPLSR PLIPRALAAA FRIGGVAGAS DSPTSQLSLP WDDDDDDEEE  600
EEDEEEDRDR DREMENAATG GGKLGKKKAR MVWTAELHHR FIEAVAQLGD KAAVPKAIVQ  660
VMNVEGITRE HVASHLQKYR LYLKRKRTTH AAPPRLRVMP PTHGFSFSSQ QSTDASERSD  720
YCEKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-22628684157Transcription factor LUX
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00543.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.16e-23G2-like family protein