PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00541.1.g00080.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 286aa    MW: 30108.7 Da    PI: 7.5026
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00541.1.g00080.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-071463344
                                    SS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrw 44
                                    +WT eEd+ + +av+    +        tW ++ ++    Rt+++++ ++
  Zpz_sc00541.1.g00080.1.sm.mkhc 14 AWTREEDKAFENAVANAAAPpadgapdeTWFSVLAESVPSRTAEEVRRHY 63
                                    6***************************99999887777**********9 PP

2Myb_DNA-binding391.8e-12133177347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Zpz_sc00541.1.g00080.1.sm.mkhc 133 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 177
                                     7*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.911169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-41467IPR009057Homeodomain-like
PROSITE profilePS500906.3421567IPR017877Myb-like domain
SuperFamilySSF466895.24E-61573IPR009057Homeodomain-like
PROSITE profilePS5129416.873126182IPR017930Myb domain
SuperFamilySSF466896.75E-17128183IPR009057Homeodomain-like
SMARTSM007172.3E-10130180IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.9E-17130180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-11131176IPR009057Homeodomain-like
CDDcd001678.81E-10133178No hitNo description
PfamPF002496.9E-11133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSSAAATATE GAAAWTREED KAFENAVANA AAPPADGAPD ETWFSVLAES VPSRTAEEVR  60
RHYEALVEDV GAIEAGRVPL PRYAGEESDG AAAASSTKDG GGGSGHRRDE RKGSVDAGKS  120
CSKAEQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR  180
LNSMNRDRRR SSIHDITSVN AGDVAAAGGA PITGGPAAAM PMGPGGMKHH HPPPPMGMYG  240
HAPMGHPVAG HMVAPAAVGT PVMFPPGHAP YVMPVGYPAP PAKMHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00541.1.g00080.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0553331e-151BT055333.2 Zea mays full-length cDNA clone ZM_BFb0024K03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455466.11e-161transcription factor MYBS1
SwissprotB8A9B21e-125MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-125MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A0A9DMW91e-164A0A0A9DMW9_ARUDO; Uncharacterized protein
STRINGSb03g011280.11e-161(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-48MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]