PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00535.1.g00200.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 348aa    MW: 37782.4 Da    PI: 6.7009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00535.1.g00200.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-141564148
                                    TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT++Ed  lv+ +++ Gg+  +W+  +r  g++R++k+c++rw +yl
  Zpz_sc00535.1.g00200.1.sm.mkhc 15 KGPWTEDEDRTLVEHIQRRGGHvsSWRNLPRAAGLNRCGKSCRLRWTNYL 64
                                    79**********************************************97 PP
2Myb_DNA-binding52.98.5e-1770114147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg++T +E+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Zpz_sc00535.1.g00200.1.sm.mkhc  70 RGNFTDDEERLIIALHADLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2121064IPR017930Myb domain
SuperFamilySSF466894.49E-2612111IPR009057Homeodomain-like
SMARTSM007171.5E-71466IPR001005SANT/Myb domain
PfamPF002497.2E-121564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-191671IPR009057Homeodomain-like
CDDcd001671.70E-61764No hitNo description
PROSITE profilePS5129426.77865119IPR017930Myb domain
SMARTSM007172.3E-1569117IPR001005SANT/Myb domain
PfamPF002491.9E-1470114IPR001005SANT/Myb domain
CDDcd001677.15E-1272115No hitNo description
Gene3DG3DSA:1.10.10.607.5E-2672120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE DEDRTLVEHI QRRGGHVSSW RNLPRAAGLN RCGKSCRLRW  60
TNYLRPDIRR GNFTDDEERL IIALHADLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLV  120
RAGVDPVTHR RLPPDVGILN GALASPGGPP AGTLLCAAAS SLRGQLDPAL IRQAQALQLL  180
LQVIGTCGSS NGSANALLGN CNLPTGNAMF TNNVNTSVAP NLQDQMMTIF SQANNQQSAG  240
YSYPPNSTAA ANFAEQGMVQ QYLKSSAPSP RYGSPNGVPA AADQYCDTTA TLERPAYPQE  300
VAAAGVDLPV PVPSFTDMLG PDDEMPNLYS LEEDGRFWDD MLHNSFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26151197108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00535.1.g00200.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569041e-163AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543981e-163BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHF6794321e-163HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
GenBankHQ8586911e-163HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.11e-112transcription factor MYB2
TrEMBLA0A1E5WJI71e-113A0A1E5WJI7_9POAL; Transcription factor MYB39
STRINGGRMZM2G081557_P011e-111(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-66myb domain protein 107