PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00523.1.g00040.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 537aa    MW: 58525.3 Da    PI: 7.1347
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00523.1.g00040.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.84.9e-28113166155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Zpz_sc00523.1.g00040.1.sm.mkhc 113 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 166
                                     79*******************.********************************8 PP
2Response_reg23.43e-0924071109
                                     TSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                    Response_reg  71 klpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                     +lp+i+++a+ge +++ + +  Ga d+l Kp+  e+l++
  Zpz_sc00523.1.g00040.1.sm.mkhc   2 DLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLRT 40 
                                     69**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011019.221146IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363925.8E-1331537IPR017053Response regulator B-type, plant
CDDcd001563.59E-8245No hitNo description
Gene3DG3DSA:3.40.50.23008.0E-15261No hitNo description
PfamPF000721.9E-5241IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.56E-11251IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.609.5E-30110171IPR009057Homeodomain-like
SuperFamilySSF466894.48E-20110170IPR009057Homeodomain-like
PROSITE profilePS5129411.34110169IPR017930Myb domain
TIGRFAMsTIGR015571.0E-24113166IPR006447Myb domain, plants
PfamPF002491.8E-6115165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDLPVIMLSA NGETQTVMKG ITHGACDYLL KPVRLEQLRT IWQHVVRRRS CDAKNHGNEN  60
DDMGKKAMNA EGENGGANRN KRTSRKVRDD NGDDGDDSDE NSNENGDSAT QKKPRVVWSV  120
ELHRKFVAAV NQLGIDKAVP KKILDLMNVE NITRENVASH LQKYRLYLKR LSADASRQAN  180
LTAALGGRNP AYINMGLEAF KHYNAYGRYR PIPTTNHSQA NNLLARMNSP SAFGMHGLLP  240
SQPLQIGYKQ NNLSTSLGNV GGMSNGNHIQ GASMSLQDSS KCFPTVPSGN SFANMSNATT  300
LAPTNSLPLR SLEPSNQQHL GRMHSSSADP FNSFVGESSP FPDLGRCNTT WPTAVSSSIQ  360
ELRQKDSMSQ ATLCVNAPKI EPLSSFTESS CQIPLLGNDL QNQVTSLTSN ALPMPFNQDA  420
VPFTYGSSTN TREMMSNNVA ASNSGINASL PNFRIDNSTV PMQTMDIGNA GGVPSLQDGR  480
IDQQAVSNQL NYNNELMGRS RLQRGLSGGL DDIVADMFRP EHAVDGIPFI EGDWEVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25111172364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00523.1.g00040.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3YQT60.0K3YQT6_SETIT; Two-component response regulator
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-60response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]