PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00514.1.g00170.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 375aa MW: 39176.8 Da PI: 5.6622 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.9 | 9e-31 | 118 | 209 | 6 | 103 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 rh ++hTkv+gR+RR+Rl caar+ L++eLG++ d++t+ WLlqq++pa++++tgt++ +a ++ +++ + Zpz_sc00514.1.g00170.1.am.mk 118 PRHRDRHTKVEGRGRRIRLAEACAARIARLTRELGHKNDGETVRWLLQQSEPAVIAATGTGTVPAIAT-TVDGVLRLP--- 194 69**********************************************************88777333.333333333... PP TCP 87 sgkaaksaakskksqks 103 ++ ++a ++q + Zpz_sc00514.1.g00170.1.am.mk 195 --SSPPAAVADGDQQPD 209 ..222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-24 | 120 | 189 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 21.52 | 120 | 174 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MVQKIIETEQ KSKSRTRPKT GAAKSKQRRR IEEAGARDES ASSPNPISLG VAAPDMGEED 60 VAAIYHAAGN GTAVTDEAVV GIDAMGSSEA HGSLMPKPEP APMEFLGELQ VANPRPAPRH 120 RDRHTKVEGR GRRIRLAEAC AARIARLTRE LGHKNDGETV RWLLQQSEPA VIAATGTGTV 180 PAIATTVDGV LRLPSSPPAA VADGDQQPDP KRRRKLQPTR AAAAGATAPP LTSTPTAYYP 240 VVADPLLQGN GGGAISTSSG LAPASVPTPP PGAIPFLAIP APGPGATIDG KQMMKPTAVW 300 MVPPQAGAGG AANQPTHYWA FPTNPELFSN FQQQAVYDAG QLVDGGESQH QQLEGHQDGE 360 GEEEDIALTE SSSEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 215 | PKRRRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00514.1.g00170.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803340.1 | 1e-133 | transcription factor PCF2-like | ||||
Swissprot | A2YXQ1 | 1e-80 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 1e-80 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A2S3H1F5 | 1e-132 | A0A2S3H1F5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EUU1 | 1e-132 | A0A2T7EUU1_9POAL; Uncharacterized protein | ||||
STRING | Sb02g030260.1 | 1e-124 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 3e-37 | TCP family protein |
Publications ? help Back to Top | |||
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