PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00491.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 397aa    MW: 42967.9 Da    PI: 9.5674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00491.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30324381359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D y+WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver+++dp+++++tYe++Hnh 
  Zpz_sc00491.1.g00160.1.am.mk 324 DSYSWRKYGQKPIKGSPHPRGYYRCSSKkDCLARKHVERCRSDPTMLIVTYENDHNHA 381
                                   99*************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.0E-7278320IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32310383IPR003657WRKY domain
PROSITE profilePS5081131.054317383IPR003657WRKY domain
SuperFamilySSF1182901.57E-26318383IPR003657WRKY domain
SMARTSM007743.8E-36322382IPR003657WRKY domain
PfamPF031061.1E-25324380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEEVEQANRA AVESCKKVVA VLSRSGNPFQ PVPVAAETDE AVARFGKVTA VLSDRLGHAR  60
ARIGKRIASP VDASYLMDHQ PIATCQTPNS ALLVGTQALP PPPPPPLPTI RSVSVMSRQE  120
TEAAPAPAPA PCANVTLTPA RFDRNMFLET PLLDLNSCSV PSPNATAVQK SRSKAVATPV  180
ANPCTTTTHI QFQPQPQQQP KAQKSFLFDQ TPSTEQFHIE VPRGGGKEVI SFSFDNNSVC  240
TSSAATSFFT SISKQLISMS DAATSSAATG KKAYGKRGED HGVKCHCPKK KFVSFASLVQ  300
WKPRDKRVVR VPAISDKNAD IPPDSYSWRK YGQKPIKGSP HPRGYYRCSS KKDCLARKHV  360
ERCRSDPTML IVTYENDHNH APPLDPSVLA ANAETCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-183203831577Probable WRKY transcription factor 4
2lex_A6e-183203831577Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00491.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8352022e-69CT835202.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.11e-156protein WRKY1
TrEMBLK4AMM71e-155K4AMM7_SETIT; Uncharacterized protein
STRINGSi040171m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.18e-41WRKY DNA-binding protein 21