PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00488.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 383aa    MW: 41808.4 Da    PI: 4.5528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00488.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-20131182156
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                     +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Zpz_sc00488.1.g00070.1.sm.mkhc 131 CGFRGVRQRT-WGKWVAEIREP---N-RaNRLWLGTFPTAEDAARAYDEAARAMYGE 182
                                     79*****999.**********8...3.469************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.99E-31131189No hitNo description
PfamPF008471.3E-13131182IPR001471AP2/ERF domain
SMARTSM003801.6E-35132195IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21132190IPR016177DNA-binding domain
PROSITE profilePS5103222.471132189IPR001471AP2/ERF domain
PRINTSPR003674.8E-10133144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31133190IPR001471AP2/ERF domain
PRINTSPR003674.8E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTVDQKAATP SRMQQVQPLQ PGRTYGAEDT VVHDPLRKIG GRALPSNEYV LSVHQRQQED  60
APRVASDMWK KRPRRSRDGP NSVTAVIQRW AQINQELEHD PEAAKKPRKA PAKGSKKGCM  120
KGKGGPENTV CGFRGVRQRT WGKWVAEIRE PNRANRLWLG TFPTAEDAAR AYDEAARAMY  180
GELARTNFPS HVSTSTQLAP APLEVVQPVS VSSESTMTSN HSDIVSSDKP DASDISSTMN  240
SGAESLGTMP CEPKIESASL DQSADGHLVP EAGSSSAADE VFEPLEPIAN LPLGNEVFDI  300
DEMLSMMEAD PQNEGSWNTT NGGDARAGLE QPPFVDGLDA TLLENMLQSE PEPWLMSQDT  360
EMYLAGFENP DFFEGSGFPE KLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15133194668ATERF1
3gcc_A2e-15133194668ATERF1
5wx9_A3e-151331961579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00488.1.g00070.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302432.11e-140dehydration-responsive element-binding protein 2B-like isoform X2
SwissprotQ5W6R41e-75DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A1N7TB581e-160A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGTraes_1AL_A9FB6BF52.11e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.24e-28DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]