PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00485.1.g00250.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 314aa MW: 33763.7 Da PI: 5.86

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00485.1.g00250.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Zpz_sc00485.1.g00250.1.am.mk 18 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 65 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.62	13	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-20	16	64	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	17	67	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-15	18	65	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.85E-20	19	87	IPR009057	Homeodomain-like
CDD	cd00167	1.08E-11	20	65	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-5	65	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAATMSKQQQ EDEMELRRGP WTLEEDNLLM NYIACHGEGR WNLLARCSGL KRTGKSCRLR 60 WLNYLKPDIK RGNLTPEEQL LILELHSNPV FRDAVRCYWM PRLLEKMAAT TAHHSHMSMD 120 PAAPLLHPAA SIGDMHMASS SPRIHHGCSQ GQPHDAINTP AATSGAGYYH VVDPSPSTST 180 TSGSGSTTAA AALPPVPCFS ELSWFDQQYY GVRPCDDPAG VFDPAGMGNL GLDGLDLGPA 240 DCAYSDSTLL DYLNSTCTGS TTTTTVLGSG AAGYATDDVD GAYYGGGPTT WRSTDELCQA 300 ARKVGDHHQR GGGI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00485.1.g00250.1.am.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679427	1e-88	HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643700.1	1e-101	PREDICTED: transcription repressor MYB4-like
Swissprot	Q9C9G7	5e-41	MYB62_ARATH; Transcription factor MYB62
TrEMBL	J3KW19	1e-100	J3KW19_ORYBR; Uncharacterized protein
STRING	Pavir.Ea00660.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	5e-43	myb domain protein 62

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]