PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00480.1.g00260.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 243aa    MW: 25793.8 Da    PI: 6.2579
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00480.1.g00260.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-1189145155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+++GV++ k++g+++A+++d  s+  g krk  + g++ t+e+Aaka++ a++k++g
  Zpz_sc00480.1.g00260.1.sm.mkhc  89 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 145
                                     789******************55558777778888.999999*************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.21E-1189156IPR016177DNA-binding domain
PfamPF008477.4E-889145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-990156IPR001471AP2/ERF domain
SMARTSM003801.8E-1290161IPR001471AP2/ERF domain
PROSITE profilePS5103215.15890155IPR001471AP2/ERF domain
PRINTSPR003676.0E-591102IPR001471AP2/ERF domain
PROSITE profilePS510329.506142210IPR001471AP2/ERF domain
SMARTSM003801.4E-4170216IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-6172212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-7184210IPR001471AP2/ERF domain
PRINTSPR003676.0E-5192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MATVQPQSSS PGPTAAPPPP PPPHPPAASV DPAAQADGGG EIAALDKQLA VVVGGGGAER  60
KSGPGAGGGG GGGKLVAEAM RKYAAPRSSR FHGVTRLKWS GKYEAHLWDN TSQVEGRKRK  120
GKHGSYVTEE QAAKAHDLAA LKYWGIGPNT KLNFNVSDYE KEIDIMKAMS QDEFVAYIRR  180
RKDETEEEAA EAYDIAAIQL RGVHAVTNFD ISNYCENDLT KIEDPSEVAK LEGPSEAMKL  240
AGQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00480.1.g00260.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.11e-113AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z023e-41CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3L6RDA81e-114A0A3L6RDA8_PANMI; AP2-like ethylene-responsive transcription factor AIL1
STRINGSi010747m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-31AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]