PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00471.1.g00360.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 599aa    MW: 63908.5 Da    PI: 7.9512
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00471.1.g00360.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.3e-314195197100
                        DUF260   7 vlrrkCakdCvlapyf....paeqp......kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 
                                   +lrr+C+++Cv+ap+f        +      ++fa+vhk+FGasnv k+l+++p   r+da+s+++yeA+ar+ dPvyG+v
  Zpz_sc00471.1.g00360.1.am.mk 419 FLRRRCVPGCVFAPHFggtrE---HgggagaAQFAAVHKVFGASNVAKMLSRVPAALRRDAASTVCYEAQARVADPVYGCV 496
                                   89**************66541...13444559************************************************* PP

                        DUF260  78 gvilklqqqleqlkaelallkee 100
                                   g+il+lq+q++ ++ el+++++e
  Zpz_sc00471.1.g00360.1.am.mk 497 GTILALQHQVALVQGELSSVQTE 519
                                   ******************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.505.6E-46084No hitNo description
Gene3DG3DSA:2.170.270.103.1E-4590318No hitNo description
SuperFamilySSF821995.4E-4090316No hitNo description
PfamPF050331.2E-995211IPR007728Pre-SET domain
PROSITE profilePS502809.591219361IPR001214SET domain
PfamPF008569.4E-6230313IPR001214SET domain
PROSITE profilePS5089118.513412520IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-34419517IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MKNLATTSAV IDSAELVLPW LPPQDLAAAA SACRAKSISD LSGMKNLATT SAVIDSAELV  60
LPWLPPQDLA AAASACRAFR AAASAVTARR AADAARGLEP LPIPFHSSVD SKPYAYFHYT  120
PFSLTVPSSS PAQPWGCALD EPPCLTWPRP NLDGFPSVEC GCACSAEECG GPECACVDAN  180
ADAADFGSEA GMGSLRECGD GCACGPSCGN RRTQRGVAVR LRVVRDKQKG WGLHAAEELS  240
RLHFVCEYAG EFLTTEEARR RQRLYDELAS AGKLFPALIV IREHLPSGKA CLRVNIDATK  300
VGNIARFINH SCDGGNLRPV LQQATESLPS SVETAHAVGN RRRASGVRSR PPRDTVLINL  360
AFAWPPRRGS YRLVTGQPSL CSSDARDVTP RSEYVHVAHD AAARQARGHR ARVGGRRAFL  420
RRRCVPGCVF APHFGGTREH GGGAGAAQFA AVHKVFGASN VAKMLSRVPA ALRRDAASTV  480
CYEAQARVAD PVYGCVGTIL ALQHQVALVQ GELSSVQTEL LNRRLALATV HPSLPSASPT  540
SQMLNCGAVP QTVDFIDIDH SLRGLPPPLV PMQQPQQEEE KDEGSPIVDV SWENRNSCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2941952117112LOB family transfactor Ramosa2.1
5ly0_B4e-2941952117112LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00471.1.g00360.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1125044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-33LOB domain-containing protein 20