PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00468.1.g00260.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 493aa    MW: 52818 Da    PI: 10.7199
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00468.1.g00260.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-15313357347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Zpz_sc00468.1.g00260.1.am.mk 313 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 357
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68159174IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.171306362IPR017930Myb domain
SuperFamilySSF466896.5E-18307363IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-18309361IPR006447Myb domain, plants
SMARTSM007171.5E-11310360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-11310356IPR009057Homeodomain-like
CDDcd001671.71E-9313358No hitNo description
PfamPF002494.9E-12313357IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MFPVHHFRVK GTRIQAKPRC VTADEAVVRC HRAPVVRCLS RQASIAGNLR LPRVDRDLGV  60
SLGTALAGAS GLIVAADAYA ATSTVRSRLL RRRALAVQIF LGTKGYISRE QKLIRSQSCK  120
YQLEQEERII DDANCSSFLL VTSTFFLLSS PSARAAMARK CSSCGNNGHN SRTCSGGGHR  180
SMDSTGVYGS DGVRLFGVQL HAGASPTPMK NGGGHRSMDS TGVYGSDGVR LFGVQLHAGA  240
SPTPMKKCFS MECLSSSAPA YYAAALAGAA SSSPSASSSS SLVSVDETAG RMTNGYLSDG  300
LMGRAQERKK GVPWTEDEHR RFLAGLEKLG KGDWRGISRH FVTTRTPTQV ASHAQKYFLR  360
QSSLTQKKRR SSLFDVIEND ERATSLNARL KLRNETSSMS ETEFPALSLG IGIRGSTAKP  420
PEHVLAPRCS AAMSSSSNAS PNVTAPRHPS LLTTSKPPPV SLQAPDLELK ISTARQTDGP  480
SPRTPFFGTI RVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00468.1.g00260.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625837.11e-104transcription factor MYBS3-like
TrEMBLA0A0A9ESZ51e-129A0A0A9ESZ5_ARUDO; Uncharacterized protein
STRINGORUFI01G06450.11e-109(Oryza rufipogon)
STRINGORGLA01G0055800.11e-109(Oryza glaberrima)
STRINGOBART01G05900.11e-109(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-43MYB_related family protein