PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00468.1.g00180.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 32800.2 Da PI: 8.7706 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 72 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+++G+g +W + +++ g++R++k+c++rw++yl Zpz_sc00468.1.g00180.1.am.mkhc 72 RGPWSPEEDEALRSYVQRHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 120 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 127 | 169 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +v + qlG++ W++Ia+ + gRt++++k++w++ Zpz_sc00468.1.g00180.1.am.mkhc 127 GGFTEEEDAVIVSLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 169 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.509 | 67 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-27 | 70 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-12 | 71 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 72 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 73 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-9 | 74 | 120 | No hit | No description |
PROSITE profile | PS51294 | 21.415 | 121 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-12 | 125 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-12 | 127 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 128 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.34E-10 | 129 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
HQWPQAPNEQ PVDRYKYHLL PAQQPSPLSC PPLLLPPARR RVGLPGTWVW VGGVCCLPMG 60 RTPCCDRTAV KRGPWSPEED EALRSYVQRH GSGGNWIALP KKAGLKRCGK SCRLRWLNYL 120 RSDIRHGGFT EEEDAVIVSL YSQLGSKWSL IASQLEGRTD NDVKNYWNTK LKKRLAAAAL 180 SVSTPSPPPL ARPPVPTPAA AHTSTSLFPS IAIPSVKTKT YTCDDFLAPA AFIRDTSLAS 240 GGGSTPPSAA SSASTWSTDN GAAAAAAAAD GFLLDFCGGS STDLGASGQL ELPGGYYYPL 300 DPSLSLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 72 | 175 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00468.1.g00180.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679416 | 1e-125 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968503.1 | 1e-116 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6SQD0 | 1e-115 | A0A3L6SQD0_PANMI; Transcription factor RAX2-like | ||||
STRING | Si002629m | 1e-115 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-60 | MYB family protein |