PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00460.1.g00190.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 621aa MW: 68645.3 Da PI: 9.544 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 125 | 160 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 +g+WT+eEd++lv + G +W+++++ g R+ Zpz_sc00460.1.g00190.1.am.mk 125 KGPWTAEEDQKLVSFILSNGRCCWRAVPKLAGASRS 160 79****************************995554 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 208 | 248 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++ Zpz_sc00460.1.g00190.1.am.mk 208 SDAEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 248 778***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 116 | 199 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.38E-10 | 119 | 205 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.897 | 120 | 198 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.5E-8 | 124 | 200 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-6 | 125 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-5 | 127 | 198 | No hit | No description |
SuperFamily | SSF46689 | 6.31E-21 | 185 | 258 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.833 | 199 | 253 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 200 | 253 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 203 | 251 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 208 | 248 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.48E-12 | 208 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MDDSNKKRDD YLRFYAGFLL IRGRTSLAAT PKRGALTART GSSRTDKRRL PTNSRAGPPL 60 RITGLTRVHG AGTWIRRHTD DTILGDYCMR LAAGVVRPVP CSPPPPPLLP YKGRQPCCDK 120 VGLKKGPWTA EEDQKLVSFI LSNGRCCWRA VPKLAGASRS LPRSPKFLCV WRRIDPTTDS 180 AGLLRCGKSC RLRWTNYLRP DLKRGLLSDA EEKLVIDLHA QLGNRWSKIA SHLPGRTDNE 240 IKNHWNTHIK KKLRKMGIDP LTHKPLQPTD HHHQQQEQLP PAEARPPKLE HQRQPTPNTL 300 TIEAAATSSQ QEEEQPPLLS KSPGFCTDEV PMIHPDEIIV PAQEDQRLLR PTPTCATATA 360 SPPPTSYSAS ASSSCDEEAA LFPAVDEWPD ATCLMGLDDM IATVPPAPWV DEWLVQPPSP 420 VFADPCFGAY PGFAWPSHRL ARAAQPSHGR RCARGGRGAG RLRVVVGSSL LCRRASSLGR 480 RPLRAREGSV AWDREGSCAG GKLGRVRPGG CNQSRITSAQ AELDHEAMEN DIRGPRMRSC 540 TLFSTWAPVF SAYVRAGAGV EEADGTLTLC FGDRDAVSPI DPYVHEHAVL ALKYMRELLD 600 TSRQRPGRPP VRTHMDLYPT H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 123 | 253 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00513 | DAP | Transfer from AT5G16600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00460.1.g00190.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033636 | 1e-101 | BT033636.1 Zea mays full-length cDNA clone ZM_BFc0115C15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444373.2 | 1e-98 | myb-related protein Zm38 | ||||
Refseq | XP_003572214.1 | 2e-99 | transcription factor MYB20 | ||||
TrEMBL | A0A3L6PKU9 | 3e-99 | A0A3L6PKU9_PANMI; Uncharacterized protein | ||||
STRING | BRADI3G36370.1 | 7e-99 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 6e-84 | myb domain protein 43 |