PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00460.1.g00190.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 621aa    MW: 68645.3 Da    PI: 9.544
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00460.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07125160136
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                                   +g+WT+eEd++lv  +   G  +W+++++  g  R+
  Zpz_sc00460.1.g00190.1.am.mk 125 KGPWTAEEDQKLVSFILSNGRCCWRAVPKLAGASRS 160
                                   79****************************995554 PP

2Myb_DNA-binding52.51.1e-16208248547
                                   -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +  E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Zpz_sc00460.1.g00190.1.am.mk 208 SDAEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 248
                                   778***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17116199IPR009057Homeodomain-like
SuperFamilySSF466894.38E-10119205IPR009057Homeodomain-like
PROSITE profilePS500908.897120198IPR017877Myb-like domain
SMARTSM007172.5E-8124200IPR001005SANT/Myb domain
PfamPF002496.0E-6125160IPR001005SANT/Myb domain
CDDcd001671.60E-5127198No hitNo description
SuperFamilySSF466896.31E-21185258IPR009057Homeodomain-like
PROSITE profilePS5129426.833199253IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-24200253IPR009057Homeodomain-like
SMARTSM007172.0E-15203251IPR001005SANT/Myb domain
PfamPF002492.3E-14208248IPR001005SANT/Myb domain
CDDcd001673.48E-12208249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MDDSNKKRDD YLRFYAGFLL IRGRTSLAAT PKRGALTART GSSRTDKRRL PTNSRAGPPL  60
RITGLTRVHG AGTWIRRHTD DTILGDYCMR LAAGVVRPVP CSPPPPPLLP YKGRQPCCDK  120
VGLKKGPWTA EEDQKLVSFI LSNGRCCWRA VPKLAGASRS LPRSPKFLCV WRRIDPTTDS  180
AGLLRCGKSC RLRWTNYLRP DLKRGLLSDA EEKLVIDLHA QLGNRWSKIA SHLPGRTDNE  240
IKNHWNTHIK KKLRKMGIDP LTHKPLQPTD HHHQQQEQLP PAEARPPKLE HQRQPTPNTL  300
TIEAAATSSQ QEEEQPPLLS KSPGFCTDEV PMIHPDEIIV PAQEDQRLLR PTPTCATATA  360
SPPPTSYSAS ASSSCDEEAA LFPAVDEWPD ATCLMGLDDM IATVPPAPWV DEWLVQPPSP  420
VFADPCFGAY PGFAWPSHRL ARAAQPSHGR RCARGGRGAG RLRVVVGSSL LCRRASSLGR  480
RPLRAREGSV AWDREGSCAG GKLGRVRPGG CNQSRITSAQ AELDHEAMEN DIRGPRMRSC  540
TLFSTWAPVF SAYVRAGAGV EEADGTLTLC FGDRDAVSPI DPYVHEHAVL ALKYMRELLD  600
TSRQRPGRPP VRTHMDLYPT H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-241232535108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00460.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336361e-101BT033636.1 Zea mays full-length cDNA clone ZM_BFc0115C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444373.21e-98myb-related protein Zm38
RefseqXP_003572214.12e-99transcription factor MYB20
TrEMBLA0A3L6PKU93e-99A0A3L6PKU9_PANMI; Uncharacterized protein
STRINGBRADI3G36370.17e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.16e-84myb domain protein 43