PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00456.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 368aa    MW: 41289.2 Da    PI: 7.919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00456.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  Zpz_sc00456.1.g00050.1.am.mk 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPEKAGLRRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-23573IPR009057Homeodomain-like
PROSITE profilePS5129421.968966IPR017930Myb domain
SMARTSM007172.1E-131396IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
SuperFamilySSF466892.41E-201495IPR009057Homeodomain-like
CDDcd001671.06E-91662No hitNo description
PROSITE profilePS500904.2176994IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-77495IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPEKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTELEDRLPG RTDNDIKNYW NTKLKKKLLG SSTVTAPPHR TPRHQHRPLN  120
LMLQHSSSSF THPTYSGFFP HATASLHDPI VPALTLPPTE DFMLGSSLAI PNASSLLHAH  180
GATQQQLHHH VVKEESGSMI VFGSDQQSCS SSDGRTHSRS QFSHGKELRF NGYYGYNNNG  240
SIEHDHRSLL QLQEHHQHAH QVPVEYNYDE LKQLLMSSTT GSNLHGSSQV RDGGMEGFGS  300
QGKVMMLTAI SACEDVYLSS WSETSCMEAK QDDHRGSAHG IEILDAKIRA REMNRSEREE  360
KIPGVCRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1714987108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00456.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.11e-161transcription factor RAX2
TrEMBLA0A3L6Q9251e-170A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRINGSi010627m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-54myb domain protein 36