PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00452.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 1370aa    MW: 150914 Da    PI: 10.7766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00452.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.46.8e-15540602156
                                   TT--SS--HHHHHHHHHH.......HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeel.......FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   r+  +++t+ q+++Le++       F+ +++p++++r+ ++++lgL+ rq+k+WFqNrR+ +k
  Zpz_sc00452.1.g00080.1.am.mk 540 RKGYHRHTPRQIQQLEAYvlllswiFKDCPHPDENQRAVMSRELGLEPRQIKFWFQNRRTHMK 602
                                   677889999999999997666666699********************************9988 PP
2START140.22.1e-447459653205
                                   HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCC CS
                         START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv..........dsgealrasgvvdmvlallveelldd 68 
                                   a +a++el+++++a+++ Wvk +     e++n   + + f    +           ++e +r+sg+v+ + + lv +++d 
  Zpz_sc00452.1.g00080.1.am.mk 745 AARAMDELLRLVQAGDQIWVKGPpgdeqEMLNVAAYDSLF----SnlgagfrppgINVEGSRDSGLVFKTIVALVDIFMDM 821
                                   6799*******************86644444433444444....1446799*****************************9 PP

                                   GGCT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.- CS
                         START  69 keqWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppes 139
                                   + +W e ++    ka t++v+ +g     + l   + el  ++plvp R+f f+Ry++q ++g w++vdvSvd + +    
  Zpz_sc00452.1.g00080.1.am.mk 822 N-KWMEVFPgivsKAHTVDVLVNGiggrnESLIMVYEELHTMTPLVPtREFSFLRYCKQIEQGLWAVVDVSVDGQHYGV-- 899
                                   9.***************************8888888888888*******************************999987.. PP

                                   TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START 140 ssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                                    +  R+++lpSg+li ++sng+skvtw+ h++ +  lp   l+r lv sg+a+ga +w+a+lqr c 
  Zpz_sc00452.1.g00080.1.am.mk 900 -PPSRSRRLPSGCLIADMSNGYSKVTWIVHMEIEQTLPiNVLYRNLVLSGAAFGAHRWLAALQRACD 965
                                   .467999*******************************999***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-15529604IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-17530606IPR009057Homeodomain-like
PROSITE profilePS5007114.236537604IPR001356Homeobox domain
SMARTSM003891.2E-11538608IPR001356Homeobox domain
CDDcd000861.48E-14540605No hitNo description
PfamPF000462.6E-12540602IPR001356Homeobox domain
PROSITE patternPS000270579602IPR017970Homeobox, conserved site
PROSITE profilePS5084843.691734969IPR002913START domain
SuperFamilySSF559615.22E-30735968No hitNo description
CDDcd088755.67E-95738964No hitNo description
SMARTSM002346.8E-33743966IPR002913START domain
PfamPF018522.2E-37745965IPR002913START domain
Gene3DG3DSA:3.30.530.208.4E-7814943IPR023393START-like domain
SuperFamilySSF559615.93E-139861218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1370 aa     Download sequence    Send to blast
MHAQHVRSTR RHEARRTCKK RGKGRFRATV LSSTSERSLS STNGEIRTTS FGMELDVPRR  60
QKHRQRTNRD WSRKERASWL GLAAVLVPAR NGSRRRRCRD EEPEASGVAS VGRSTFALAS  120
SSTHARGRGS VQLRSRRRAQ QQQQQQTPRR ALALPGVRGG KGRSTAFVLV WGSHVAMRYE  180
ASGRSVRARG AASDPCLPPP PTTHPPYAPN NQWGTVLSAS APPGPRSQNR ANQRLGSGNM  240
GCEGGETGGA SRRAPGQWGK KLSRTPQEHG RGRTVTRDFV ARGRGARRWK ELQATQAPRY  300
WRAYSLLSAT TPHGERPRAT LVRRPRRRLS LAARRVVRSC DWFYSYTPGE RSGTTTECRL  360
RSEAVHFKIP AWHNRGTVAA AAAKQKRPSR WVVRWMRPNG GNNHRPDRLG FVRIDVPRRK  420
SNRCIQHDCA GCWSLEVSVN RMQGVTTYKL SFAEPGLSAN ASLTTVFRLR RFAEAGCGDC  480
CGGDAATGMG SGYEWPVVKR GFDLVAESDC SSEREGLVNI RTAAMDFGDE PEDSSSQRRR  540
KGYHRHTPRQ IQQLEAYVLL LSWIFKDCPH PDENQRAVMS RELGLEPRQI KFWFQNRRTH  600
MKAQHERVDN CFLRTENDKI RCENISMREA LRNVICPNCG GPPVAEDYFD EHKLRMENAS  660
LKEELERISS FTSKHLGRSF MPMPPMPTMP ASGLDLSVGT MSAPALDLDL LGSGSTGSRM  720
GPFRLPFHMP AHVMEMERPM MINTAARAMD ELLRLVQAGD QIWVKGPPGD EQEMLNVAAY  780
DSLFSNLGAG FRPPGINVEG SRDSGLVFKT IVALVDIFMD MNKWMEVFPG IVSKAHTVDV  840
LVNGIGGRNE SLIMVYEELH TMTPLVPTRE FSFLRYCKQI EQGLWAVVDV SVDGQHYGVP  900
PSRSRRLPSG CLIADMSNGY SKVTWIVHME IEQTLPINVL YRNLVLSGAA FGAHRWLAAL  960
QRACDRLASL DALGAPHHDP SGVTAEGKRG LMKLSQRMVS FFCASLTSSP VQQWTVIPGT  1020
IDASVRVISH RSADLGQHGS AVLGAAASFW LPVPCEHVFA FLRDDSTRYQ WDVLTHGDQV  1080
EEVSRIAVGA NPGNCISLLR GLNSIQNSTM ILQESCTDAS GSLVVYSPID FSAANVVMSG  1140
ADPSGIPLLP SGFAILPGGR PGTGSGASSS AGQLAPPPGC VVTVAFQIVV SGVPSSMLTA  1200
ESVSAVNNLV TGTVQQIRAG FFCETEGVKN APCYLVPFLS LPPSPHPAPF ILSDAHGGDV  1260
MARPRRRLSR RRRRGRSGRA GIVVQARAVV GGWRTQPWRH ANSPRRPLYF AYPYTVATTP  1320
ASCTSIITTP APAPPRPAPP QLLWPPYPRL AGHPNLIHRS SLDGHGRAWV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327RRPRRR
212651272RRLSRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00452.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLC5Z6D60.0C5Z6D6_SORBI; Uncharacterized protein
STRINGSb10g006820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11