PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00446.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 31462.3 Da PI: 8.2904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.4 | 2.3e-15 | 179 | 224 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r+++ +g+++AeIrd + ng r+++g+f+t+e Aa a+++a+ +++g Zpz_sc00446.1.g00050.1.am.mk 179 RRRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMNG 224 6777.**********44465..************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.77 | 174 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-26 | 174 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 175 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-19 | 176 | 233 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.72E-11 | 176 | 233 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-24 | 177 | 233 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-10 | 179 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 198 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDRRQPESIP PHTPPTLRRR PPVVTSHYAS PQYGGGGYSH HQSSPAGWVS SSMPSSMPSS 60 SPSHHHHYQQ QQQLQFGGGV DDYHRGHVDL DQFSALMGAA SISTTTTTSS SRSSASTTYA 120 PSAASCWPTE AFTGAHSSSA ATVHANGIVD GSSRGDQHLQ VQPNCGDGDD ADAALVGGRR 180 RPWGKYAAEI RDSTRNGERV WIGTFDTPEA AALAYDQAAY SMNGPGAVRN FPVRRVQETL 240 RDLGLSGAAG AGTQAAPLHP QKIAQGQKGS WRGPDHGDLQ WVRQAEAGGR FWRAGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 177 | 232 | 17 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00446.1.g00050.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727883 | 2e-65 | KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959050.1 | 4e-38 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1W0W2N4 | 3e-47 | A0A1W0W2N4_SORBI; Uncharacterized protein | ||||
STRING | Sb02g005840.1 | 6e-43 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-17 | ethylene response factor 1 |