PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00440.1.g00250.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TALE | ||||||||
Protein Properties | Length: 161aa MW: 18575 Da PI: 6.784 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.3 | 4.7e-07 | 101 | 128 | 28 | 55 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55 e++ +LA+ +gL+++q+ +WF N+R ++ Zpz_sc00440.1.g00250.1.am.mk 101 EDKVRLASMTGLDTKQINNWFINQRKRH 128 67889********************985 PP | |||||||
2 | ELK | 34.3 | 5e-12 | 35 | 56 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Zpz_sc00440.1.g00250.1.am.mk 35 ELKEMLLKKYSGCLSRLRSEFL 56 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 10.423 | 35 | 55 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 35 | 56 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.9E-9 | 35 | 56 | IPR005539 | ELK domain |
SMART | SM00389 | 3.5E-5 | 57 | 135 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.01E-15 | 57 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 60 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.62E-10 | 67 | 132 | No hit | No description |
Pfam | PF05920 | 4.0E-10 | 75 | 127 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 9.556 | 100 | 131 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MPDEMIGSSE DDQCSGDTDV ADVGQEHSSR LADHELKEML LKKYSGCLSR LRSEFLKKRK 60 KGKLPKDARL VLLDWWNTHY RWPYPTVDAE HCIFYHCNME EDKVRLASMT GLDTKQINNW 120 FINQRKRHWK PSEDMRFALM EGVAGSSSGT TLYFDAGTIG P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 59 | LRSEFLKKRK |
2 | 56 | 60 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00440.1.g00250.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966118 | 1e-59 | EU966118.1 Zea mays clone 291871 homeobox protein OSH1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967561.1 | 4e-86 | homeobox protein knotted-1-like 1 | ||||
Swissprot | A2Y007 | 2e-82 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 2e-82 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A368R0G5 | 1e-84 | A0A368R0G5_SETIT; Uncharacterized protein | ||||
STRING | Sb03g012480.1 | 2e-85 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.2 | 4e-38 | KNOTTED1-like homeobox gene 6 |