PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00434.1.g00270.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 396aa MW: 43557 Da PI: 11.4482

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00434.1.g00270.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	155.7	7.8e-49	268	361	8	101
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ++i+ +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt++ Zpz_sc00434.1.g00270.1.am.mk 268 REIDAVTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEV 348 57899************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdflvdivpr+e Zpz_sc00434.1.g00270.1.am.mk 349 FDFLVDIVPREED 361 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.31E-30	235	352	IPR009072	Histone-fold
Pfam	PF00808	6.6E-21	280	343	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.6E-36	281	358	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MRAWRDGMSE HTVLSVAEAK QAVVISWTKP SRRPGSIETD DGCKRGCRAV RHDGTDRNRA 60 WFRAFTRARG QPRGRRDDDR SVAGAVLRMC GVRQCASTLN TAGSVASRTR LAGQHSTGRG 120 GVRSMRSYVL SVARASDAAA PRSPIPHNKL PLSLVPPDTT TAIQDAVIVA AQPTDQLVLM 180 GRSRPFRRPA VIFANGNPRL LSSPRHAHPR DAIESASLSP NQFAEPRLRL RNPSNGSQIH 240 HSSTASPRHG RARRVPAGRR VRRSXXYREI DAVTDFKNHN LPLARIKKIM KADEDVRMIA 300 AEAPVVFARA CEMFILELTH RGWAHAEENK RRTLQKSDIA AAVARTEVFD FLVDIVPREE 360 DKDAEAAAAA VGAGIPHPAA GMPTTDPMAY YYVQPQ

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MRAWRDGMSE HTVLSVAEAK QAVVISWTKP SRRPGSIETD DGCKRGCRAV RHDGTDRNRA  60
WFRAFTRARG QPRGRRDDDR SVAGAVLRMC GVRQCASTLN TAGSVASRTR LAGQHSTGRG  120
GVRSMRSYVL SVARASDAAA PRSPIPHNKL PLSLVPPDTT TAIQDAVIVA AQPTDQLVLM  180
GRSRPFRRPA VIFANGNPRL LSSPRHAHPR DAIESASLSP NQFAEPRLRL RNPSNGSQIH  240
HSSTASPRHG RARRVPAGRR VRRSXXYREI DAVTDFKNHN LPLARIKKIM KADEDVRMIA  300
AEAPVVFARA CEMFILELTH RGWAHAEENK RRTLQKSDIA AAVARTEVFD FLVDIVPREE  360
DKDAEAAAAA VGAGIPHPAA GMPTTDPMAY YYVQPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	9e-48	267	358	4	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	336	RRTLQKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00434.1.g00270.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974115	1e-144	EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	1e-51	nuclear factor Y, subunit C3