PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00416.1.g00230.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 261aa MW: 28936.4 Da PI: 7.422

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00416.1.g00230.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.7	7.9e-13	35	59	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Zpz_sc00416.1.g00230.1.am.mkhc 35 QPECQYYLKTGICKFGATCKFHHPR 59 799********************96 PP
2	zf-CCCH	37	5.6e-12	144	169	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Zpz_sc00416.1.g00230.1.am.mkhc 144 DQPECQFYMKTGDCKFGAGCKFHHPK 169 689*********************96 PP
3	zf-CCCH	39.4	1e-12	189	215	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ Zpz_sc00416.1.g00230.1.am.mkhc 189 PGEPICTFYSRYGICKFGPNCKFDHPM 215 5899*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.8E-6	32	59	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.943	32	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-10	35	59	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-7	35	61	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.3E-5	38	60	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4E-4	142	169	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.197	142	170	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-9	144	169	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-6	146	170	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.2E-5	148	169	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-7	188	215	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.704	188	216	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.4E-10	190	215	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	191	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-5	193	214	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MWQMDLGEAS ESVLYPERAV AVARMKGEYP QRVGQPECQY YLKTGICKFG ATCKFHHPRE 60 KAAAMANRVQ WNSLGYPLRP AQIGSSSSDD QQRTSGGAQY YTGSQQSETT AMGDQGMFSS 120 YQAGSVPVGL YAVPRENVFP DRPDQPECQF YMKTGDCKFG AGCKFHHPKD RTVPPPNCEL 180 SPIGLPLRPG EPICTFYSRY GICKFGPNCK FDHPMDQVMY GHVSSPTSEA PTTRHMLAQV 240 PSHSDSQQTQ PGERSTEREA S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00416.1.g00230.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979251.1	1e-116	zinc finger CCCH domain-containing protein 63 isoform X1
Swissprot	Q2R4J4	1e-113	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0D9Z6U4	1e-134	A0A0D9Z6U4_9ORYZ; Uncharacterized protein
STRING	Si026440m	1e-116	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.1	3e-83	zinc finger nuclease 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]