PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00412.1.g00130.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 381aa MW: 39997.1 Da PI: 9.594

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00412.1.g00130.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.8e-43	165	263	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++++kf vh++FGasnv+kll++l+e +reda++sl+yeA++r+rdPvyG+vgvi+ Zpz_sc00412.1.g00130.1.am.mk 165 PCAACKFLRRKCQPDCVFAPYFPPDNTQKFVHVHRVFGASNVTKLLNELQEFQREDAVNSLAYEADMRLRDPVYGCVGVIS 245 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq++l+ql++ela++k Zpz_sc00412.1.g00130.1.am.mk 246 VLQHNLRQLQQELARAKY 263 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	164	265	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-43	165	262	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MVAIKVFNGE GPRSLPPAGE GPRPINHASS PPLLASSACI QFALRARIVG CASPWLAQRT 60 WTAAGPHSGK QQQQQPPPVR SGRREARRAR RRDESGGSRG VGKAEIAEEI IIIIIIIQKK 120 GREPDRSQMA SSSASSMPTP SGSLITVAAS STSAAAAAVC GTGSPCAACK FLRRKCQPDC 180 VFAPYFPPDN TQKFVHVHRV FGASNVTKLL NELQEFQRED AVNSLAYEAD MRLRDPVYGC 240 VGVISVLQHN LRQLQQELAR AKYELSKYQQ AAAAAAAANA STGPNGPQPM AEFIGNGMPN 300 GGHNFINIGH SPALGSIGVF GQDHFANAQM LSRNYDGGYE FGYPAAMGGN GGPASSLGSL 360 GVSSFLKSGT AGGDDKPSAG Q

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MVAIKVFNGE GPRSLPPAGE GPRPINHASS PPLLASSACI QFALRARIVG CASPWLAQRT  60
WTAAGPHSGK QQQQQPPPVR SGRREARRAR RRDESGGSRG VGKAEIAEEI IIIIIIIQKK  120
GREPDRSQMA SSSASSMPTP SGSLITVAAS STSAAAAAVC GTGSPCAACK FLRRKCQPDC  180
VFAPYFPPDN TQKFVHVHRV FGASNVTKLL NELQEFQRED AVNSLAYEAD MRLRDPVYGC  240
VGVISVLQHN LRQLQQELAR AKYELSKYQQ AAAAAAAANA STGPNGPQPM AEFIGNGMPN  300
GGHNFINIGH SPALGSIGVF GQDHFANAQM LSRNYDGGYE FGYPAAMGGN GGPASSLGSL  360
GVSSFLKSGT AGGDDKPSAG Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-50	161	268	7	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-50	161	268	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00412.1.g00130.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB200237	1e-146	AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds.
GenBank	AK071407	1e-146	AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence.
GenBank	AK119575	1e-146	AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence.
GenBank	EF540766	1e-146	EF540766.1 Oryza sativa Japonica Group LOB domain protein 6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970852.1	1e-137	LOB domain-containing protein 6
Swissprot	Q32SG3	1e-132	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	K3XL26	1e-136	K3XL26_SETIT; Uncharacterized protein
STRING	Si002599m	1e-137	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-52	LBD family protein