PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00411.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 518aa MW: 56844.3 Da PI: 7.3254 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.3 | 2.1e-19 | 177 | 224 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed+llv+ v+q+G g+W++++++ g++R++k+c++rw +yl Zpz_sc00411.1.g00050.1.am.mk 177 KGPWTTQEDKLLVEHVQQHGEGRWNSVSKHTGLKRSGKSCRLRWVNYL 224 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.7e-17 | 230 | 274 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Zpz_sc00411.1.g00050.1.am.mk 230 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 274 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.614 | 172 | 224 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-29 | 175 | 271 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-17 | 176 | 226 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-18 | 177 | 224 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 178 | 231 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.85E-12 | 179 | 224 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 225 | 279 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 229 | 277 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 230 | 274 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 232 | 277 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.42E-10 | 234 | 275 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
LAGPLSRAEE DDDDDASLGL VIRWRDREAP GGVGEELESA RTALRKVKEV VVVVCGGSKL 60 REGNTHTPYV HRASSTSPVT ARQLRTCPSG QVPWMREPAS SWGLGRGLRR GGERLGETSS 120 PVPHIYAAAA HSSLIVRQHK RKERRAASPA SRPWIDIHEL TEGQLAWGGR EVDGWRKGPW 180 TTQEDKLLVE HVQQHGEGRW NSVSKHTGLK RSGKSCRLRW VNYLRPDLKR GKITPQEESI 240 IVQLHALWGN RWSTIARSLP GRTDNEIKNY WRTHFKKGKP SKNIERARAR FLKQRREMQI 300 QQQQQLQQLV SKVDENTNHD DGATRCGTLV EAEDRGSAVV DNACAGTTAA AVTDQSSGQH 360 HQAAAPDLAM HDAMMDFMCP MSCGLLLHGA GAHQGGASAG SCCGSTSEEY GSSEEDGATW 420 GSLWNLEDVV GDGGGPGAYA SGWASEIDPN FPSTNDLHAL NEVGEETEVD SERGGRELVA 480 RTSAHRLILR LPWWWWITTS EQPLPYFHFA AAAAAGAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 177 | 277 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00411.1.g00050.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-128 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824833.1 | 1e-120 | transcription factor MYB8-like isoform X2 | ||||
TrEMBL | A0A3L6PVQ3 | 1e-123 | A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like | ||||
STRING | Si010822m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 4e-62 | myb domain protein 79 |