PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00410.1.g00240.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 558aa    MW: 60315.6 Da    PI: 10.6662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00410.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19247296255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+++l+g
  Zpz_sc00410.1.g00240.1.am.mk 247 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAALALRG 296
                                   7********.**********88.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.7E-33247310IPR001471AP2/ERF domain
PfamPF008471.1E-12247296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28247304IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21247304IPR016177DNA-binding domain
PROSITE profilePS5103221.694247304IPR001471AP2/ERF domain
CDDcd000181.08E-25247303No hitNo description
PRINTSPR003676.0E-9248259IPR001471AP2/ERF domain
PRINTSPR003676.0E-9270286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MARHRRGPAS VERRSGTREP RGAESCSGTS PRETSAPASR PHEEDTGALV SGGGIESTAP  60
RSGTPREDSL HRWAGRGRQC TGLGAQFGRA VRHGVTGRGV VSSVLCRCLL LLRAVGLASQ  120
RQADRCAKPG LRSTGRRDHS LERVRSRKAS NRAAAGLSPD AVRAAGQRQP QSPRKPTPRF  180
TRRGHYPTNP RGREKKRMQM EWDIMAGHHP HGSVAGAVAD GGGGATSSVA PAAVVGADQH  240
QQLRGEHYRG VRKRPWGRYA AEIRDPWRKT RVWLGTYDTP VEAALAYDRA ALALRGFKAR  300
TNFGSGSGSG IGRYPPAHQP PRPTPNPVQA FGGLDISQPS PWHFIYVPSR RHQSMETTEP  360
DFDEDVAATL PSTALELRTG PRSLPFDLNE PPSLMFGKVT SSEANPRKSG ERWSRSPPGL  420
PNFPADDTPS PWASSRRPDR QPSDKTEQRG DIPNDGDRPD EERPVGGTDE GIRDGDEPDV  480
DYPDDCLDRA SQRRGAPGAG EPMIEASWLE INGGSGASGA RGSRQERAER RARAGRAGGS  540
GLSERNLDTE SRLALSDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-19244303262ATERF1
3gcc_A9e-19244303262ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00410.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085231e-68AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423931e-68AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149611e-68AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-68CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288801e-68CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-21ERF domain protein 12