PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00403.1.g00300.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 464aa    MW: 50589.5 Da    PI: 8.9836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00403.1.g00300.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.7e-121446134
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                                  rg WT+eEd +l+ +++q+G+++W++I++  g  
  Zpz_sc00403.1.g00300.1.am.mk 14 RGQWTPEEDNKLLSYITQYGTRNWRLIPKNAG-L 46
                                  89***************************999.3 PP
2Myb_DNA-binding44.73.1e-1490132246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T  E++ +++++   G++ W+ Ia+ ++ gRt++++k++w++
  Zpz_sc00403.1.g00300.1.am.mk  90 GEFTDAEEQTIIKLHSVVGNR-WSVIAAQLP-GRTDNDVKNHWNT 132
                                   789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23586IPR009057Homeodomain-like
PROSITE profilePS5129414.07983IPR017930Myb domain
SuperFamilySSF466893.24E-2511130IPR009057Homeodomain-like
SMARTSM007172.9E-111385IPR001005SANT/Myb domain
PfamPF002499.4E-131483IPR001005SANT/Myb domain
CDDcd001671.16E-91783No hitNo description
PROSITE profilePS5129424.90584138IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2487138IPR009057Homeodomain-like
SMARTSM007172.8E-1488136IPR001005SANT/Myb domain
PfamPF002499.3E-1390132IPR001005SANT/Myb domain
CDDcd001672.19E-1091134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGRVPCCEKD NVKRGQWTPE EDNKLLSYIT QYGTRNWRLI PKNAGLSPAN ACARQRPPSH  60
KFLPALRLQR CGKSCRLRWT NYLRPDLKHG EFTDAEEQTI IKLHSVVGNR WSVIAAQLPG  120
RTDNDVKNHW NTKLKKKLSG MGIDPVTHKS FSHLMAEIAT TLAPPQVAHL AEAALGCFKD  180
EMLHLLTKKR PTMPDMAPAP GAGIGMGIAG GTAAPSFPAQ PQADDTIERI KLGLSRAIMN  240
EPGASASDKH QPPWAPVDVP EGLTGMYAAY DPAQGHENFR YEGTVSEYVL GGGDADQGTS  300
MWSHQSIYSG SSGTEAPRAA SALPKKGNDS VGSSRGEDEM DDSKEGGKGG SDMSGLFGSD  360
CVLWDLQDEL TNHMLSFFWR TCSKPRLRRC IGRSERARLK FTLLLSEIFT EKCSVSPFLF  420
SMAAAQLHGS AAAAAAASYR RTRPFAVSPS CRWVQNPLPG SPKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141387108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00403.1.g00300.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342381e-160BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds.
GenBankBT0394221e-160BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds.
GenBankBT0406701e-160BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds.
GenBankBT0432401e-160BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds.
GenBankBT0549881e-160BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146260.10.0uncharacterized LOC100279834
SwissprotQ7XQN11e-169MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A3L6GFB10.0A0A3L6GFB1_MAIZE; Transcription factor MYB80
STRINGGRMZM2G173633_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-106myb domain protein 103