PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00398.1.g00170.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 577aa MW: 63407 Da PI: 11.1628 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 362 | 409 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+t+++ g+ R++k+c++rw +yl Zpz_sc00398.1.g00170.1.am.mk 362 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 409 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2.1e-14 | 415 | 457 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++++eE++l++++++ lG++ W+ I+ +++ gRt++++k+ w+ Zpz_sc00398.1.g00170.1.am.mk 415 RGAFSQEEEDLIIELHAVLGNR-WSQISTRLP-GRTDNEIKNLWN 457 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-27 | 354 | 412 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.396 | 357 | 409 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-29 | 360 | 456 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-12 | 361 | 411 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-15 | 362 | 409 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.08E-11 | 365 | 409 | No hit | No description |
PROSITE profile | PS51294 | 24.63 | 410 | 464 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 413 | 464 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-13 | 414 | 462 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 415 | 457 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-9 | 417 | 457 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MWRCYAFVDD CLYDTRAELS RVRSTSLLFG SAEPPPSMTP ALSFVVAGYR GPEPRRATDK 60 KPLVSADHAT RQQRAMTGRT TKRNTPASAG RPVPRVRGND GVVVRAVGRR CRLGSAEARA 120 RPGLSSPTDR RSGPLAVRPD RLRYHLPVNI QPQQQPAPPK RQSSIATFVR GTDVTEPPTP 180 TTRTRSSSSS SSNFRRRGRS RVTSIPAEVR RRPVDRKGQA APSAAREPVT VLKDRSYGRV 240 VSAVCGGYTR ARSLLPCCPA PRADATSSSS SIRPFRRARA HSGPGRRVLV PAGLLAAGER 300 NRTDGVAAAK GRRPERGAKT EPCSLALYAR AHSSYRLQSS ASASAFLSMG RHSCCYKQKL 360 RKGLWSPEED EKLMNHITKH GHGCWSTVPK LAGLQRCGKS CRLRWINYLR PDLKRGAFSQ 420 EEEDLIIELH AVLGNRWSQI STRLPGRTDN EIKNLWNSSI KKKLRQKGID PNTHKPLAEV 480 EHSKAAPIIS TERTSESSDF DPSIGGAIGN LNHIMSETAQ SPELLPVLGH QTINNLEELE 540 SRVPNSTGIP LILAAPVAEE AVEAKAWDLS CRERAHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 360 | 464 | 5 | 108 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 211 | RRRGRSRVTSIPAEVRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00398.1.g00170.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679417 | 0.0 | HF679417.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB11 protein. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 5e-88 | myb domain protein 61 |