PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00393.1.g00090.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 567aa    MW: 62366.8 Da    PI: 9.8931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00393.1.g00090.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18313362255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++a +++++g
  Zpz_sc00393.1.g00090.1.am.mkhc 313 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 362
                                     69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-31313371IPR001471AP2/ERF domain
PROSITE profilePS5103223.709313370IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21313371IPR016177DNA-binding domain
CDDcd000186.46E-30313372No hitNo description
SMARTSM003804.3E-36313376IPR001471AP2/ERF domain
PfamPF008471.3E-11314362IPR001471AP2/ERF domain
PRINTSPR003675.4E-10314325IPR001471AP2/ERF domain
PRINTSPR003675.4E-10336352IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVDRTRRGSF LKGDPAHDGH VRLAARDDYS LCYSPTKKSA ASTRARSLGS AKATRGGRRP  60
RAGAARKKEA KRWLLTGRAP NNSPASPRHP HTTPYLLRLN HRHSSSSRVR MLWLTLGPHH  120
AFRHLPASTA HHTASHIKLP APASLPGIVW FAQAKKGSFT VPNPFAFPIH TRFPLLPFLR  180
GGCGGARGAD RTMCGGAILA NLTKHPEPRR RLTEGALWPE KKKPKRGGAG GRRRYPAGFV  240
EEDDEDFEAD FEEFEGDSGE SDLELGQGED DDVVEIKPFA AKRNFTRDGL STMTTANFDG  300
PAARSAKRKR KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL GTYNSPEEAA RAYDAEARRI  360
RGKKAKVNFP DTPTGVQKRR ASPAAARAPK SSFEQKPAVK AAMNNPINTN GSCCPSADYT  420
SNKQVVQLDD LTFSPALNSP APYEDPIMNL HSDQGSNSFS YSDFGWENDT KTPDITSITP  480
VSTIAEGDES EFVNKNSNGS LVPPVMDNNP VDLTDGLTDL EPYMRFILDG GASESIDSLL  540
NLDGSQDVLS SMDLWSFDDM PISGDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-18312370160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-18313370563ATERF1
3gcc_A5e-18313370563ATERF1
5wx9_A8e-183133701472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00393.1.g00090.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816350.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-162ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6RNH80.0A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRINGPavir.Aa00281.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.23e-31related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]