PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00392.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 35357.6 Da PI: 10.4771 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.1e-21 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Zpz_sc00392.1.g00050.1.am.mk 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 196 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.64E-30 | 146 | 206 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 147 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 147 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-23 | 147 | 206 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 147 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 148 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-15 | 148 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MFRVRSKTHR SPAVITPSGL VARTSVPRTK LPASRSWLRS AISKVITTPA CYKSAPAPRF 60 FPNPSPHQTI HQFPTRTPQS TTTERSEKPS SPNPFARPLT QLRPSEFLQF VEVNFSLRWS 120 LSSSPASGAG SGSTAAASAH PPRPQKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA 180 EEAALAYDQA AYRLRGDAAR LNFPDNAASR APLEPAVDAK LQTICATIAA ASSSSKGKGR 240 VGAVPINMAP QAQPMSPSRS SSDEGSGSGS SDDDEAASSA AAAVAAVAPL AEMGQLDFSE 300 VPWDEAESFV LRKYPSYEID WDALLGSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 146 | 204 | 4 | 63 | ATERF1 |
3gcc_A | 6e-20 | 146 | 204 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00392.1.g00050.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP742345 | 1e-106 | KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820073.1 | 9e-90 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 1e-50 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1E5WHM8 | 6e-90 | A0A1E5WHM8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01600.1.p | 7e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-34 | related to AP2 4 |
Publications ? help Back to Top | |||
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