PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00381.1.g00410.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 444aa MW: 48261 Da PI: 8.7024 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lppGfrFhP+d+elv +yL +k+++k + +vd++k+ePwdLp+++ +++ewyfFs +d+kyatg+r+nr Zpz_sc00381.1.g00410.1.am.mk 12 LPPGFRFHPRDDELVLDYLYHKLSSKGggggaY-SGINMVDVDLNKCEPWDLPEEACVGSREWYFFSLHDRKYATGQRTNR 91 79**********************999888632.3245999************87777899******************** PP NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at+sgyWkatgkd+++ +++g++vg++ktLvfy+grap+g+kt+Wvmhe+r+ Zpz_sc00381.1.g00410.1.am.mk 92 ATRSGYWKATGKDRPISRRRGAVVGMRKTLVFYQGRAPRGRKTEWVMHEFRV 143 **************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-56 | 2 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.957 | 12 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 444 aa Download sequence Send to blast |
MMSSISMVEA RLPPGFRFHP RDDELVLDYL YHKLSSKGGG GGAYSGINMV DVDLNKCEPW 60 DLPEEACVGS REWYFFSLHD RKYATGQRTN RATRSGYWKA TGKDRPISRR RGAVVGMRKT 120 LVFYQGRAPR GRKTEWVMHE FRVEGPAVAD AVAGSPLTED WVLCRVFYRS RTVTTRPAPA 180 DVEAGSLANE LITLPMPHAP PVDAYLLALD HAPAATIGGF YYQQDDDGGL PAAQGKTMSN 240 FRELLTSMVE RDGGAAAKPE LHQHHHHQDW TEAAYAAQQS AVAAQAWNPF LNSGSRDLPV 300 TEAGAEPVSK GIPSPAARSS RFAASAVPPP GSPVFARVRP LLVSPALGCQ QLPPFPSMPP 360 AQAFGTVVSI CALLRGVAAL NVEVSLVRII GDFLHCKTSS FCVLVPRQFG GSRDSPERSI 420 GWAGVRVSSM NRPSSCVYIA IVLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 7 | 167 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00381.1.g00410.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU968752 | 1e-119 | EU968752.1 Zea mays clone 323927 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824710.1 | 1e-131 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 3e-71 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2S3IAF0 | 1e-129 | A0A2S3IAF0_9POAL; Uncharacterized protein | ||||
STRING | Si010680m | 1e-129 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 4e-73 | NAC domain containing protein 1 |