PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00381.1.g00410.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 444aa    MW: 48261 Da    PI: 8.7024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00381.1.g00410.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52121431128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                                   lppGfrFhP+d+elv +yL +k+++k            + +vd++k+ePwdLp+++  +++ewyfFs +d+kyatg+r+nr
  Zpz_sc00381.1.g00410.1.am.mk  12 LPPGFRFHPRDDELVLDYLYHKLSSKGggggaY-SGINMVDVDLNKCEPWDLPEEACVGSREWYFFSLHDRKYATGQRTNR 91 
                                   79**********************999888632.3245999************87777899******************** PP

                           NAM  77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   at+sgyWkatgkd+++ +++g++vg++ktLvfy+grap+g+kt+Wvmhe+r+
  Zpz_sc00381.1.g00410.1.am.mk  92 ATRSGYWKATGKDRPISRRRGAVVGMRKTLVFYQGRAPRGRKTEWVMHEFRV 143
                                   **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-562169IPR003441NAC domain
PROSITE profilePS5100554.95712169IPR003441NAC domain
PfamPF023651.1E-2513143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMSSISMVEA RLPPGFRFHP RDDELVLDYL YHKLSSKGGG GGAYSGINMV DVDLNKCEPW  60
DLPEEACVGS REWYFFSLHD RKYATGQRTN RATRSGYWKA TGKDRPISRR RGAVVGMRKT  120
LVFYQGRAPR GRKTEWVMHE FRVEGPAVAD AVAGSPLTED WVLCRVFYRS RTVTTRPAPA  180
DVEAGSLANE LITLPMPHAP PVDAYLLALD HAPAATIGGF YYQQDDDGGL PAAQGKTMSN  240
FRELLTSMVE RDGGAAAKPE LHQHHHHQDW TEAAYAAQQS AVAAQAWNPF LNSGSRDLPV  300
TEAGAEPVSK GIPSPAARSS RFAASAVPPP GSPVFARVRP LLVSPALGCQ QLPPFPSMPP  360
AQAFGTVVSI CALLRGVAAL NVEVSLVRII GDFLHCKTSS FCVLVPRQFG GSRDSPERSI  420
GWAGVRVSSM NRPSSCVYIA IVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-45716715166NAC domain-containing protein 19
3swm_B2e-45716715166NAC domain-containing protein 19
3swm_C2e-45716715166NAC domain-containing protein 19
3swm_D2e-45716715166NAC domain-containing protein 19
3swp_A2e-45716715166NAC domain-containing protein 19
3swp_B2e-45716715166NAC domain-containing protein 19
3swp_C2e-45716715166NAC domain-containing protein 19
3swp_D2e-45716715166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00381.1.g00410.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687521e-119EU968752.1 Zea mays clone 323927 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-131NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-71NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3IAF01e-129A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGSi010680m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-73NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]